==40757== Memcheck, a memory error detector ==40757== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40757== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40757== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40757== Parent PID: 24028 ==40757== ==40757== ==40757== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40757== Open file descriptor 12: ==40757== at 0x125DA07D: pipe (pipe.c:29) ==40757== by 0x1B3D807D: ??? ==40757== by 0x1653C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40757== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40757== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40757== by 0x10B4FD38: PetscInitialize (pinit.c:924) ==40757== by 0x10A27079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40757== by 0x10A270C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40757== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40757== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40757== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40757== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40757== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40757== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40757== ==40757== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40757== at 0x125DEA1C: __open_nocancel (open64_nocancel.c:39) ==40757== by 0x12562BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40757== by 0x11DD9822: ??? ==40757== by 0x11DD996F: ??? ==40757== by 0x165E36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40757== by 0x165E3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40757== by 0x16599922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40757== by 0x1653C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40757== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40757== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40757== by 0x10B4FD38: PetscInitialize (pinit.c:924) ==40757== by 0x10A27079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40757== by 0x10A270C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40757== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40757== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40757== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40757== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40757== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40757== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==40757== ==40757== Open file descriptor 145: ==40757== ==40757== ==40757== Open file descriptor 142: ==40757== ==40757== ==40757== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==40757== ==40757== ==40757== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40757== ==40757== ==40757== ==40757== HEAP SUMMARY: ==40757== in use at exit: 618,386 bytes in 8,236 blocks ==40757== total heap usage: 1,755,666 allocs, 1,747,430 frees, 1,515,897,582 bytes allocated ==40757== ==40757== LEAK SUMMARY: ==40757== definitely lost: 0 bytes in 0 blocks ==40757== indirectly lost: 0 bytes in 0 blocks ==40757== possibly lost: 0 bytes in 0 blocks ==40757== still reachable: 56 bytes in 3 blocks ==40757== suppressed: 618,330 bytes in 8,233 blocks ==40757== Reachable blocks (those to which a pointer was found) are not shown. ==40757== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40757== ==40757== For lists of detected and suppressed errors, rerun with: -s ==40757== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)