==41738== Memcheck, a memory error detector ==41738== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41738== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41738== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info ==41738== Parent PID: 24706 ==41738== ==41738== ==41738== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41738== Open file descriptor 12: ==41738== at 0xC0F307D: pipe (pipe.c:29) ==41738== by 0x1433007D: ??? ==41738== by 0xFB1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41738== by 0xB9FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41738== by 0xB994D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41738== by 0x8258D38: PetscInitialize (pinit.c:924) ==41738== by 0xB8C7079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41738== by 0xB8C70C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41738== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41738== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41738== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41738== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41738== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41738== by 0x138285: main (TestBidomainProblem.cpp:19) ==41738== ==41738== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41738== at 0xC0F7A1C: __open_nocancel (open64_nocancel.c:39) ==41738== by 0xC07BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41738== by 0x80FD822: ??? ==41738== by 0x80FD96F: ??? ==41738== by 0xFBC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41738== by 0xFBC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41738== by 0xFB79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41738== by 0xFB1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41738== by 0xB9FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41738== by 0xB994D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41738== by 0x8258D38: PetscInitialize (pinit.c:924) ==41738== by 0xB8C7079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41738== by 0xB8C70C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41738== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41738== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41738== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41738== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41738== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41738== by 0x138285: main (TestBidomainProblem.cpp:19) ==41738== ==41738== Open file descriptor 145: ==41738== ==41738== ==41738== Open file descriptor 142: ==41738== ==41738== ==41738== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt ==41738== ==41738== ==41738== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41738== ==41738== ==41738== ==41738== HEAP SUMMARY: ==41738== in use at exit: 618,911 bytes in 8,249 blocks ==41738== total heap usage: 584,919 allocs, 576,670 frees, 1,549,322,416 bytes allocated ==41738== ==41738== LEAK SUMMARY: ==41738== definitely lost: 0 bytes in 0 blocks ==41738== indirectly lost: 0 bytes in 0 blocks ==41738== possibly lost: 0 bytes in 0 blocks ==41738== still reachable: 24 bytes in 2 blocks ==41738== suppressed: 618,887 bytes in 8,247 blocks ==41738== Reachable blocks (those to which a pointer was found) are not shown. ==41738== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41738== ==41738== For lists of detected and suppressed errors, rerun with: -s ==41738== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38)