==27307== Memcheck, a memory error detector ==27307== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27307== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27307== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27307== Parent PID: 24706 ==27307== ==27307== ==27307== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27307== Open file descriptor 12: ==27307== at 0xF98E07D: pipe (pipe.c:29) ==27307== by 0x1971807D: ??? ==27307== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27307== by 0x11604418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27307== by 0x1159DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27307== by 0x1027AD38: PetscInitialize (pinit.c:924) ==27307== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27307== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27307== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27307== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27307== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27307== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27307== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27307== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27307== ==27307== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27307== at 0xF992A1C: __open_nocancel (open64_nocancel.c:39) ==27307== by 0xF916BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27307== by 0xF19B822: ??? ==27307== by 0xF19B96F: ??? ==27307== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27307== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27307== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27307== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27307== by 0x11604418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27307== by 0x1159DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27307== by 0x1027AD38: PetscInitialize (pinit.c:924) ==27307== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27307== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27307== by 0x213670: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27307== by 0x20AE19: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27307== by 0x20EA68: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27307== by 0x20E908: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27307== by 0x20EF9F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27307== by 0x209235: main (TestOffLatticeSimulationWithNodeBasedCellPopulation.cpp:19) ==27307== ==27307== Open file descriptor 145: ==27307== ==27307== ==27307== Open file descriptor 142: ==27307== ==27307== ==27307== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulation_valgrind.txt ==27307== ==27307== ==27307== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27307== ==27307== ==27307== ==27307== HEAP SUMMARY: ==27307== in use at exit: 618,402 bytes in 8,237 blocks ==27307== total heap usage: 18,276,801 allocs, 18,268,564 frees, 30,047,794,754 bytes allocated ==27307== ==27307== LEAK SUMMARY: ==27307== definitely lost: 0 bytes in 0 blocks ==27307== indirectly lost: 0 bytes in 0 blocks ==27307== possibly lost: 0 bytes in 0 blocks ==27307== still reachable: 88 bytes in 4 blocks ==27307== suppressed: 618,314 bytes in 8,233 blocks ==27307== Reachable blocks (those to which a pointer was found) are not shown. ==27307== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27307== ==27307== For lists of detected and suppressed errors, rerun with: -s ==27307== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)