==41021== Memcheck, a memory error detector ==41021== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41021== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41021== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==41021== Parent PID: 24706 ==41021== ==41021== ==41021== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41021== Open file descriptor 12: ==41021== at 0x125DA07D: pipe (pipe.c:29) ==41021== by 0x1B3D807D: ??? ==41021== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41021== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41021== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41021== by 0x6210D38: PetscInitialize (pinit.c:924) ==41021== by 0x11DA5079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41021== by 0x11DA50C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41021== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41021== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41021== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41021== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41021== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41021== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41021== ==41021== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41021== at 0x125DEA1C: __open_nocancel (open64_nocancel.c:39) ==41021== by 0x12562BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41021== by 0x11DD9822: ??? ==41021== by 0x11DD996F: ??? ==41021== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41021== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41021== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41021== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41021== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41021== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41021== by 0x6210D38: PetscInitialize (pinit.c:924) ==41021== by 0x11DA5079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41021== by 0x11DA50C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41021== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41021== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41021== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41021== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41021== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41021== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==41021== ==41021== Open file descriptor 145: ==41021== ==41021== ==41021== Open file descriptor 142: ==41021== ==41021== ==41021== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==41021== ==41021== ==41021== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41021== ==41021== ==41021== ==41021== HEAP SUMMARY: ==41021== in use at exit: 618,543 bytes in 8,241 blocks ==41021== total heap usage: 53,879 allocs, 45,638 frees, 1,339,300,156 bytes allocated ==41021== ==41021== LEAK SUMMARY: ==41021== definitely lost: 0 bytes in 0 blocks ==41021== indirectly lost: 0 bytes in 0 blocks ==41021== possibly lost: 0 bytes in 0 blocks ==41021== still reachable: 136 bytes in 4 blocks ==41021== suppressed: 618,407 bytes in 8,237 blocks ==41021== Reachable blocks (those to which a pointer was found) are not shown. ==41021== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41021== ==41021== For lists of detected and suppressed errors, rerun with: -s ==41021== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)