==25865== Memcheck, a memory error detector ==25865== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25865== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25865== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25865== Parent PID: 23988 ==25865== ==25865== ==25865== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25865== Open file descriptor 12: ==25865== at 0xEFF507D: pipe (pipe.c:29) ==25865== by 0x1971807D: ??? ==25865== by 0x13CBB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25865== by 0xEC42418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25865== by 0xEBDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25865== by 0xD8D2D38: PetscInitialize (pinit.c:924) ==25865== by 0xD745079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25865== by 0xD7450C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25865== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25865== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25865== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25865== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25865== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25865== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25865== ==25865== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25865== at 0xEFF9A1C: __open_nocancel (open64_nocancel.c:39) ==25865== by 0xEF7DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25865== by 0xD779822: ??? ==25865== by 0xD77996F: ??? ==25865== by 0x13D606DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25865== by 0x13D60938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25865== by 0x13D16922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25865== by 0x13CBB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25865== by 0xEC42418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25865== by 0xEBDBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25865== by 0xD8D2D38: PetscInitialize (pinit.c:924) ==25865== by 0xD745079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25865== by 0xD7450C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25865== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25865== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25865== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25865== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25865== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25865== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25865== ==25865== Open file descriptor 145: ==25865== ==25865== ==25865== Open file descriptor 142: ==25865== ==25865== ==25865== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25865== ==25865== ==25865== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25865== ==25865== ==25865== ==25865== HEAP SUMMARY: ==25865== in use at exit: 618,415 bytes in 8,239 blocks ==25865== total heap usage: 166,086 allocs, 157,847 frees, 1,349,977,601 bytes allocated ==25865== ==25865== LEAK SUMMARY: ==25865== definitely lost: 0 bytes in 0 blocks ==25865== indirectly lost: 0 bytes in 0 blocks ==25865== possibly lost: 0 bytes in 0 blocks ==25865== still reachable: 24 bytes in 2 blocks ==25865== suppressed: 618,391 bytes in 8,237 blocks ==25865== Reachable blocks (those to which a pointer was found) are not shown. ==25865== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25865== ==25865== For lists of detected and suppressed errors, rerun with: -s ==25865== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)