==26584== Memcheck, a memory error detector ==26584== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26584== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26584== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26584== Parent PID: 23988 ==26584== ==26584== ==26584== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26584== Open file descriptor 12: ==26584== at 0x10E4307D: pipe (pipe.c:29) ==26584== by 0x1971807D: ??? ==26584== by 0x14CCC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26584== by 0x109A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26584== by 0x10942D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26584== by 0xF639D38: PetscInitialize (pinit.c:924) ==26584== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26584== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26584== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26584== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26584== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26584== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26584== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26584== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26584== ==26584== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26584== at 0x10E47A1C: __open_nocancel (open64_nocancel.c:39) ==26584== by 0x10DCBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26584== by 0xF19B822: ??? ==26584== by 0xF19B96F: ??? ==26584== by 0x14D716DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26584== by 0x14D71938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26584== by 0x14D27922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26584== by 0x14CCC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26584== by 0x109A9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26584== by 0x10942D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26584== by 0xF639D38: PetscInitialize (pinit.c:924) ==26584== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26584== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26584== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26584== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26584== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26584== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26584== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26584== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26584== ==26584== Open file descriptor 145: ==26584== ==26584== ==26584== Open file descriptor 142: ==26584== ==26584== ==26584== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26584== ==26584== ==26584== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26584== ==26584== ==26584== ==26584== HEAP SUMMARY: ==26584== in use at exit: 618,447 bytes in 8,240 blocks ==26584== total heap usage: 875,243 allocs, 867,003 frees, 1,505,017,007 bytes allocated ==26584== ==26584== LEAK SUMMARY: ==26584== definitely lost: 0 bytes in 0 blocks ==26584== indirectly lost: 0 bytes in 0 blocks ==26584== possibly lost: 0 bytes in 0 blocks ==26584== still reachable: 56 bytes in 3 blocks ==26584== suppressed: 618,391 bytes in 8,237 blocks ==26584== Reachable blocks (those to which a pointer was found) are not shown. ==26584== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26584== ==26584== For lists of detected and suppressed errors, rerun with: -s ==26584== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)