==26821== Memcheck, a memory error detector ==26821== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26821== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26821== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==26821== Parent PID: 23988 ==26821== ==26821== ==26821== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26821== Open file descriptor 12: ==26821== at 0xF94A07D: pipe (pipe.c:29) ==26821== by 0x1971A07D: ??? ==26821== by 0x12B504CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26821== by 0x10244418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26821== by 0x101DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26821== by 0x103CBD38: PetscInitialize (pinit.c:924) ==26821== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26821== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26821== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26821== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26821== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26821== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26821== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26821== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26821== ==26821== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26821== at 0xF94EA1C: __open_nocancel (open64_nocancel.c:39) ==26821== by 0xF8D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26821== by 0xF19B822: ??? ==26821== by 0xF19B96F: ??? ==26821== by 0x12BF76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26821== by 0x12BF7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26821== by 0x12BAD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26821== by 0x12B502DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26821== by 0x10244418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26821== by 0x101DDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26821== by 0x103CBD38: PetscInitialize (pinit.c:924) ==26821== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26821== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26821== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26821== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26821== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26821== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26821== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26821== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26821== ==26821== Open file descriptor 145: ==26821== ==26821== ==26821== Open file descriptor 142: ==26821== ==26821== ==26821== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==26821== ==26821== ==26821== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26821== ==26821== ==26821== ==26821== HEAP SUMMARY: ==26821== in use at exit: 618,370 bytes in 8,236 blocks ==26821== total heap usage: 7,126,962 allocs, 7,118,726 frees, 9,040,291,315 bytes allocated ==26821== ==26821== LEAK SUMMARY: ==26821== definitely lost: 0 bytes in 0 blocks ==26821== indirectly lost: 0 bytes in 0 blocks ==26821== possibly lost: 0 bytes in 0 blocks ==26821== still reachable: 56 bytes in 3 blocks ==26821== suppressed: 618,314 bytes in 8,233 blocks ==26821== Reachable blocks (those to which a pointer was found) are not shown. ==26821== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26821== ==26821== For lists of detected and suppressed errors, rerun with: -s ==26821== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)