==27364== Memcheck, a memory error detector ==27364== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27364== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27364== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27364== Parent PID: 23988 ==27364== ==27364== ==27364== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27364== Open file descriptor 12: ==27364== at 0xFE0A07D: pipe (pipe.c:29) ==27364== by 0x1971807D: ??? ==27364== by 0x12C874CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27364== by 0x10702418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27364== by 0x1069BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27364== by 0x10847D38: PetscInitialize (pinit.c:924) ==27364== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27364== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27364== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27364== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27364== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27364== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27364== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27364== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27364== ==27364== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27364== at 0xFE0EA1C: __open_nocancel (open64_nocancel.c:39) ==27364== by 0xFD92BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27364== by 0xF19B822: ??? ==27364== by 0xF19B96F: ??? ==27364== by 0x12D2C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27364== by 0x12D2C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27364== by 0x12CE2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27364== by 0x12C872DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27364== by 0x10702418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27364== by 0x1069BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27364== by 0x10847D38: PetscInitialize (pinit.c:924) ==27364== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27364== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27364== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27364== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27364== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27364== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27364== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27364== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27364== ==27364== Open file descriptor 145: ==27364== ==27364== ==27364== Open file descriptor 142: ==27364== ==27364== ==27364== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27364== ==27364== ==27364== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27364== ==27364== ==27364== ==27364== HEAP SUMMARY: ==27364== in use at exit: 618,370 bytes in 8,236 blocks ==27364== total heap usage: 7,141,318 allocs, 7,133,082 frees, 8,072,842,536 bytes allocated ==27364== ==27364== LEAK SUMMARY: ==27364== definitely lost: 0 bytes in 0 blocks ==27364== indirectly lost: 0 bytes in 0 blocks ==27364== possibly lost: 0 bytes in 0 blocks ==27364== still reachable: 56 bytes in 3 blocks ==27364== suppressed: 618,314 bytes in 8,233 blocks ==27364== Reachable blocks (those to which a pointer was found) are not shown. ==27364== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27364== ==27364== For lists of detected and suppressed errors, rerun with: -s ==27364== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32)