==40003== Memcheck, a memory error detector ==40003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40003== Parent PID: 23988 ==40003== ==40003== ==40003== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40003== Open file descriptor 12: ==40003== at 0x10E0107D: pipe (pipe.c:29) ==40003== by 0x1971807D: ??? ==40003== by 0x14CCC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40003== by 0x10967418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40003== by 0x10900D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40003== by 0xF5F7D38: PetscInitialize (pinit.c:924) ==40003== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40003== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40003== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40003== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40003== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40003== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40003== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40003== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==40003== ==40003== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40003== at 0x10E05A1C: __open_nocancel (open64_nocancel.c:39) ==40003== by 0x10D89BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40003== by 0xF19B822: ??? ==40003== by 0xF19B96F: ??? ==40003== by 0x14D716DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40003== by 0x14D71938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40003== by 0x14D27922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40003== by 0x14CCC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40003== by 0x10967418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40003== by 0x10900D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40003== by 0xF5F7D38: PetscInitialize (pinit.c:924) ==40003== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40003== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40003== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40003== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40003== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40003== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40003== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40003== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==40003== ==40003== Open file descriptor 145: ==40003== ==40003== ==40003== Open file descriptor 142: ==40003== ==40003== ==40003== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt ==40003== ==40003== ==40003== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40003== ==40003== ==40003== ==40003== HEAP SUMMARY: ==40003== in use at exit: 618,370 bytes in 8,236 blocks ==40003== total heap usage: 11,436,899 allocs, 11,428,663 frees, 4,779,349,053 bytes allocated ==40003== ==40003== LEAK SUMMARY: ==40003== definitely lost: 0 bytes in 0 blocks ==40003== indirectly lost: 0 bytes in 0 blocks ==40003== possibly lost: 0 bytes in 0 blocks ==40003== still reachable: 56 bytes in 3 blocks ==40003== suppressed: 618,314 bytes in 8,233 blocks ==40003== Reachable blocks (those to which a pointer was found) are not shown. ==40003== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40003== ==40003== For lists of detected and suppressed errors, rerun with: -s ==40003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)