==25900== Memcheck, a memory error detector ==25900== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25900== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25900== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25900== Parent PID: 23988 ==25900== ==25900== ==25900== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25900== Open file descriptor 12: ==25900== at 0xDBB107D: pipe (pipe.c:29) ==25900== by 0x1971707D: ??? ==25900== by 0x12B1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25900== by 0xFE58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25900== by 0xFDF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25900== by 0xFF9FD38: PetscInitialize (pinit.c:924) ==25900== by 0xD7B8079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25900== by 0xD7B80C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25900== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25900== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25900== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25900== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25900== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25900== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25900== ==25900== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25900== at 0xDBB5A1C: __open_nocancel (open64_nocancel.c:39) ==25900== by 0xDB39BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25900== by 0xD7EC822: ??? ==25900== by 0xD7EC96F: ??? ==25900== by 0x12BC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25900== by 0x12BC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25900== by 0x12B79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25900== by 0x12B1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25900== by 0xFE58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25900== by 0xFDF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25900== by 0xFF9FD38: PetscInitialize (pinit.c:924) ==25900== by 0xD7B8079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25900== by 0xD7B80C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25900== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25900== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25900== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25900== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25900== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25900== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25900== ==25900== Open file descriptor 145: ==25900== ==25900== ==25900== Open file descriptor 142: ==25900== ==25900== ==25900== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25900== ==25900== ==25900== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25900== ==25900== ==25900== ==25900== HEAP SUMMARY: ==25900== in use at exit: 618,415 bytes in 8,239 blocks ==25900== total heap usage: 58,394 allocs, 50,155 frees, 1,339,653,702 bytes allocated ==25900== ==25900== LEAK SUMMARY: ==25900== definitely lost: 0 bytes in 0 blocks ==25900== indirectly lost: 0 bytes in 0 blocks ==25900== possibly lost: 0 bytes in 0 blocks ==25900== still reachable: 24 bytes in 2 blocks ==25900== suppressed: 618,391 bytes in 8,237 blocks ==25900== Reachable blocks (those to which a pointer was found) are not shown. ==25900== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25900== ==25900== For lists of detected and suppressed errors, rerun with: -s ==25900== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)