==26456== Memcheck, a memory error detector ==26456== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26456== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26456== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==26456== Parent PID: 23988 ==26456== ==26456== ==26456== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26456== Open file descriptor 12: ==26456== at 0xF98E07D: pipe (pipe.c:29) ==26456== by 0x1971807D: ??? ==26456== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26456== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0x1027AD38: PetscInitialize (pinit.c:924) ==26456== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26456== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26456== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26456== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26456== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26456== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26456== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26456== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26456== ==26456== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26456== at 0xF992A1C: __open_nocancel (open64_nocancel.c:39) ==26456== by 0xF916BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26456== by 0xF1A1822: ??? ==26456== by 0xF1A196F: ??? ==26456== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26456== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26456== by 0x115EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0x11583D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26456== by 0x1027AD38: PetscInitialize (pinit.c:924) ==26456== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26456== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26456== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26456== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26456== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26456== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26456== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26456== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==26456== ==26456== Open file descriptor 145: ==26456== ==26456== ==26456== Open file descriptor 142: ==26456== ==26456== ==26456== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==26456== ==26456== ==26456== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26456== ==26456== ==26456== ==26456== HEAP SUMMARY: ==26456== in use at exit: 618,370 bytes in 8,236 blocks ==26456== total heap usage: 12,094,026 allocs, 12,085,790 frees, 3,801,078,738 bytes allocated ==26456== ==26456== LEAK SUMMARY: ==26456== definitely lost: 0 bytes in 0 blocks ==26456== indirectly lost: 0 bytes in 0 blocks ==26456== possibly lost: 0 bytes in 0 blocks ==26456== still reachable: 56 bytes in 3 blocks ==26456== suppressed: 618,314 bytes in 8,233 blocks ==26456== Reachable blocks (those to which a pointer was found) are not shown. ==26456== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26456== ==26456== For lists of detected and suppressed errors, rerun with: -s ==26456== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)