==40851== Memcheck, a memory error detector ==40851== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40851== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40851== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40851== Parent PID: 23988 ==40851== ==40851== ==40851== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40851== Open file descriptor 12: ==40851== at 0x125DA07D: pipe (pipe.c:29) ==40851== by 0x1B3D807D: ??? ==40851== by 0x1653C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40851== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40851== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40851== by 0x10B4FD38: PetscInitialize (pinit.c:924) ==40851== by 0x10A27079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40851== by 0x10A270C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40851== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40851== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40851== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40851== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40851== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40851== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40851== ==40851== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40851== at 0x125DEA1C: __open_nocancel (open64_nocancel.c:39) ==40851== by 0x12562BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40851== by 0x11DDF822: ??? ==40851== by 0x11DDF96F: ??? ==40851== by 0x165E36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40851== by 0x165E3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40851== by 0x16599922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40851== by 0x1653C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40851== by 0x11EE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40851== by 0x11E7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40851== by 0x10B4FD38: PetscInitialize (pinit.c:924) ==40851== by 0x10A27079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40851== by 0x10A270C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40851== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40851== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40851== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40851== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40851== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40851== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40851== ==40851== Open file descriptor 145: ==40851== ==40851== ==40851== Open file descriptor 142: ==40851== ==40851== ==40851== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40851== ==40851== ==40851== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40851== ==40851== ==40851== ==40851== HEAP SUMMARY: ==40851== in use at exit: 618,386 bytes in 8,236 blocks ==40851== total heap usage: 16,194,203 allocs, 16,185,967 frees, 2,837,218,732 bytes allocated ==40851== ==40851== LEAK SUMMARY: ==40851== definitely lost: 0 bytes in 0 blocks ==40851== indirectly lost: 0 bytes in 0 blocks ==40851== possibly lost: 0 bytes in 0 blocks ==40851== still reachable: 56 bytes in 3 blocks ==40851== suppressed: 618,330 bytes in 8,233 blocks ==40851== Reachable blocks (those to which a pointer was found) are not shown. ==40851== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40851== ==40851== For lists of detected and suppressed errors, rerun with: -s ==40851== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)