==25993== Memcheck, a memory error detector ==25993== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25993== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25993== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==25993== Parent PID: 23963 ==25993== ==25993== ==25993== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25993== Open file descriptor 12: ==25993== at 0xF93607D: pipe (pipe.c:29) ==25993== by 0x1971807D: ??? ==25993== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25993== by 0x11503418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25993== by 0x1149CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25993== by 0x10191D38: PetscInitialize (pinit.c:924) ==25993== by 0xF1F6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25993== by 0xF1F60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25993== by 0x2E35A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25993== by 0x2DA099: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25993== by 0x2DE8F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25993== by 0x2DE796: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25993== by 0x2DEE2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25993== by 0x2D84B5: main (TestNodeBasedCellPopulation.cpp:19) ==25993== ==25993== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25993== at 0xF93AA1C: __open_nocancel (open64_nocancel.c:39) ==25993== by 0xF8BEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25993== by 0xF230822: ??? ==25993== by 0xF23096F: ??? ==25993== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25993== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25993== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25993== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25993== by 0x11503418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25993== by 0x1149CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25993== by 0x10191D38: PetscInitialize (pinit.c:924) ==25993== by 0xF1F6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25993== by 0xF1F60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25993== by 0x2E35A2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25993== by 0x2DA099: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25993== by 0x2DE8F6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25993== by 0x2DE796: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25993== by 0x2DEE2D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25993== by 0x2D84B5: main (TestNodeBasedCellPopulation.cpp:19) ==25993== ==25993== Open file descriptor 145: ==25993== ==25993== ==25993== Open file descriptor 142: ==25993== ==25993== ==25993== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==25993== ==25993== ==25993== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25993== ==25993== ==25993== ==25993== HEAP SUMMARY: ==25993== in use at exit: 618,370 bytes in 8,236 blocks ==25993== total heap usage: 30,290,674 allocs, 30,282,438 frees, 3,165,103,065 bytes allocated ==25993== ==25993== LEAK SUMMARY: ==25993== definitely lost: 0 bytes in 0 blocks ==25993== indirectly lost: 0 bytes in 0 blocks ==25993== possibly lost: 0 bytes in 0 blocks ==25993== still reachable: 56 bytes in 3 blocks ==25993== suppressed: 618,314 bytes in 8,233 blocks ==25993== Reachable blocks (those to which a pointer was found) are not shown. ==25993== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25993== ==25993== For lists of detected and suppressed errors, rerun with: -s ==25993== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)