==26732== Memcheck, a memory error detector ==26732== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26732== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26732== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==26732== Parent PID: 23963 ==26732== ==26732== ==26732== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26732== Open file descriptor 12: ==26732== at 0xF94A07D: pipe (pipe.c:29) ==26732== by 0x1971807D: ??? ==26732== by 0x14D1D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26732== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26732== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26732== by 0x10236D38: PetscInitialize (pinit.c:924) ==26732== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26732== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26732== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26732== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26732== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26732== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26732== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26732== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26732== ==26732== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26732== at 0xF94EA1C: __open_nocancel (open64_nocancel.c:39) ==26732== by 0xF8D2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26732== by 0xF1A1822: ??? ==26732== by 0xF1A196F: ??? ==26732== by 0x14DC26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26732== by 0x14DC2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26732== by 0x14D78922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26732== by 0x14D1D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26732== by 0x115A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26732== by 0x11541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26732== by 0x10236D38: PetscInitialize (pinit.c:924) ==26732== by 0xF167079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26732== by 0xF1670C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26732== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26732== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26732== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26732== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26732== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26732== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==26732== ==26732== Open file descriptor 145: ==26732== ==26732== ==26732== Open file descriptor 142: ==26732== ==26732== ==26732== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==26732== ==26732== ==26732== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26732== ==26732== ==26732== ==26732== HEAP SUMMARY: ==26732== in use at exit: 618,370 bytes in 8,236 blocks ==26732== total heap usage: 7,126,963 allocs, 7,118,727 frees, 9,040,291,980 bytes allocated ==26732== ==26732== LEAK SUMMARY: ==26732== definitely lost: 0 bytes in 0 blocks ==26732== indirectly lost: 0 bytes in 0 blocks ==26732== possibly lost: 0 bytes in 0 blocks ==26732== still reachable: 56 bytes in 3 blocks ==26732== suppressed: 618,314 bytes in 8,233 blocks ==26732== Reachable blocks (those to which a pointer was found) are not shown. ==26732== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26732== ==26732== For lists of detected and suppressed errors, rerun with: -s ==26732== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)