==39980== Memcheck, a memory error detector ==39980== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39980== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39980== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39980== Parent PID: 23963 ==39980== ==39980== ==39980== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39980== Open file descriptor 12: ==39980== at 0xFC0007D: pipe (pipe.c:29) ==39980== by 0x1971707D: ??? ==39980== by 0x14D204CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39980== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39980== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39980== by 0x1014FD38: PetscInitialize (pinit.c:924) ==39980== by 0xF504079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39980== by 0xF5040C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39980== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39980== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39980== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39980== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39980== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39980== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==39980== ==39980== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39980== at 0xFC04A1C: __open_nocancel (open64_nocancel.c:39) ==39980== by 0xFB88BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39980== by 0xF53E822: ??? ==39980== by 0xF53E96F: ??? ==39980== by 0x14DC56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39980== by 0x14DC5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39980== by 0x14D7B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39980== by 0x14D202DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39980== by 0x114BF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39980== by 0x11458D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39980== by 0x1014FD38: PetscInitialize (pinit.c:924) ==39980== by 0xF504079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39980== by 0xF5040C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39980== by 0x11CA56: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39980== by 0x118313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39980== by 0x11A5FE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39980== by 0x11A4F9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39980== by 0x11AB0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39980== by 0x116B15: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18) ==39980== ==39980== Open file descriptor 145: ==39980== ==39980== ==39980== Open file descriptor 142: ==39980== ==39980== ==39980== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningTumourSpheroidSimulationsTutorial_valgrind.txt ==39980== ==39980== ==39980== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39980== ==39980== ==39980== ==39980== HEAP SUMMARY: ==39980== in use at exit: 618,370 bytes in 8,236 blocks ==39980== total heap usage: 2,094,032 allocs, 2,085,796 frees, 1,709,413,887 bytes allocated ==39980== ==39980== LEAK SUMMARY: ==39980== definitely lost: 0 bytes in 0 blocks ==39980== indirectly lost: 0 bytes in 0 blocks ==39980== possibly lost: 0 bytes in 0 blocks ==39980== still reachable: 56 bytes in 3 blocks ==39980== suppressed: 618,314 bytes in 8,233 blocks ==39980== Reachable blocks (those to which a pointer was found) are not shown. ==39980== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39980== ==39980== For lists of detected and suppressed errors, rerun with: -s ==39980== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)