==39614== Memcheck, a memory error detector ==39614== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39614== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39614== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial -malloc_debug -malloc_dump -memory_info ==39614== Parent PID: 23965 ==39614== ==39614== ==39614== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39614== Open file descriptor 12: ==39614== at 0x10D6E07D: pipe (pipe.c:29) ==39614== by 0x1972907D: ??? ==39614== by 0x14C944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39614== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39614== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39614== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==39614== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39614== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39614== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39614== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39614== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39614== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39614== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39614== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39614== ==39614== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39614== at 0x10D72A1C: __open_nocancel (open64_nocancel.c:39) ==39614== by 0x10CF6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39614== by 0x10531822: ??? ==39614== by 0x1053196F: ??? ==39614== by 0x14D396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39614== by 0x14D39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39614== by 0x14CEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39614== by 0x14C942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39614== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39614== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39614== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==39614== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39614== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39614== by 0x13161D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39614== by 0x12C98F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39614== by 0x12EEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39614== by 0x12EDDB: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39614== by 0x12F3EF: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39614== by 0x12B185: main (TestCreatingAndUsingANewCellBasedSimulationModifierTutorial.cpp:18) ==39614== ==39614== Open file descriptor 145: ==39614== ==39614== ==39614== Open file descriptor 142: ==39614== ==39614== ==39614== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewCellBasedSimulationModifierTutorial_valgrind.txt ==39614== ==39614== ==39614== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39614== ==39614== ==39614== ==39614== HEAP SUMMARY: ==39614== in use at exit: 618,447 bytes in 8,240 blocks ==39614== total heap usage: 579,721 allocs, 571,481 frees, 1,652,034,494 bytes allocated ==39614== ==39614== LEAK SUMMARY: ==39614== definitely lost: 0 bytes in 0 blocks ==39614== indirectly lost: 0 bytes in 0 blocks ==39614== possibly lost: 0 bytes in 0 blocks ==39614== still reachable: 56 bytes in 3 blocks ==39614== suppressed: 618,391 bytes in 8,237 blocks ==39614== Reachable blocks (those to which a pointer was found) are not shown. ==39614== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39614== ==39614== For lists of detected and suppressed errors, rerun with: -s ==39614== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)