==40383== Memcheck, a memory error detector ==40383== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40383== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40383== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40383== Parent PID: 23965 ==40383== ==40383== ==40383== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40383== Open file descriptor 12: ==40383== at 0x1262E07D: pipe (pipe.c:29) ==40383== by 0x1B3EA07D: ??? ==40383== by 0x1654E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40383== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40383== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40383== by 0x10BC6D38: PetscInitialize (pinit.c:924) ==40383== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40383== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40383== by 0x2254E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40383== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40383== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40383== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40383== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40383== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40383== ==40383== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40383== at 0x12632A1C: __open_nocancel (open64_nocancel.c:39) ==40383== by 0x125B6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40383== by 0x6122822: ??? ==40383== by 0x612296F: ??? ==40383== by 0x165F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40383== by 0x165F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40383== by 0x165A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40383== by 0x1654E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40383== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40383== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40383== by 0x10BC6D38: PetscInitialize (pinit.c:924) ==40383== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40383== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40383== by 0x2254E3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40383== by 0x21CBDF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40383== by 0x2206BC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40383== by 0x2205B7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40383== by 0x220BCB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40383== by 0x21B3D5: main (TestCryptSimulation1d.cpp:18) ==40383== ==40383== Open file descriptor 145: ==40383== ==40383== ==40383== Open file descriptor 142: ==40383== ==40383== ==40383== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40383== ==40383== ==40383== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40383== ==40383== ==40383== ==40383== HEAP SUMMARY: ==40383== in use at exit: 618,386 bytes in 8,236 blocks ==40383== total heap usage: 4,127,677 allocs, 4,119,441 frees, 1,974,597,525 bytes allocated ==40383== ==40383== LEAK SUMMARY: ==40383== definitely lost: 0 bytes in 0 blocks ==40383== indirectly lost: 0 bytes in 0 blocks ==40383== possibly lost: 0 bytes in 0 blocks ==40383== still reachable: 56 bytes in 3 blocks ==40383== suppressed: 618,330 bytes in 8,233 blocks ==40383== Reachable blocks (those to which a pointer was found) are not shown. ==40383== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40383== ==40383== For lists of detected and suppressed errors, rerun with: -s ==40383== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)