==40453== Memcheck, a memory error detector ==40453== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40453== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40453== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40453== Parent PID: 23965 ==40453== ==40453== ==40453== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40453== Open file descriptor 12: ==40453== at 0x1262E07D: pipe (pipe.c:29) ==40453== by 0x1B3EA07D: ??? ==40453== by 0x1654E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40453== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40453== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40453== by 0x10BC6D38: PetscInitialize (pinit.c:924) ==40453== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40453== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40453== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40453== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40453== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40453== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40453== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40453== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40453== ==40453== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40453== at 0x12632A1C: __open_nocancel (open64_nocancel.c:39) ==40453== by 0x125B6BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40453== by 0x6122822: ??? ==40453== by 0x612296F: ??? ==40453== by 0x165F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40453== by 0x165F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40453== by 0x165A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40453== by 0x1654E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40453== by 0x11F36418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40453== by 0x11ECFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40453== by 0x10BC6D38: PetscInitialize (pinit.c:924) ==40453== by 0x10A9AE75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40453== by 0x10A9AEC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40453== by 0x2244A1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40453== by 0x21BEB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40453== by 0x21FAC0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40453== by 0x21F960: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40453== by 0x21FFF7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40453== by 0x21A2D5: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40453== ==40453== Open file descriptor 145: ==40453== ==40453== ==40453== Open file descriptor 142: ==40453== ==40453== ==40453== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40453== ==40453== ==40453== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40453== ==40453== ==40453== ==40453== HEAP SUMMARY: ==40453== in use at exit: 618,386 bytes in 8,236 blocks ==40453== total heap usage: 3,713,926 allocs, 3,705,690 frees, 1,620,668,910 bytes allocated ==40453== ==40453== LEAK SUMMARY: ==40453== definitely lost: 0 bytes in 0 blocks ==40453== indirectly lost: 0 bytes in 0 blocks ==40453== possibly lost: 0 bytes in 0 blocks ==40453== still reachable: 56 bytes in 3 blocks ==40453== suppressed: 618,330 bytes in 8,233 blocks ==40453== Reachable blocks (those to which a pointer was found) are not shown. ==40453== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40453== ==40453== For lists of detected and suppressed errors, rerun with: -s ==40453== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)