==41137== Memcheck, a memory error detector ==41137== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41137== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41137== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestExtendedBidomainProblem -malloc_debug -malloc_dump -memory_info ==41137== Parent PID: 23965 ==41137== ==41137== ==41137== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41137== Open file descriptor 12: ==41137== at 0xA9A607D: pipe (pipe.c:29) ==41137== by 0x1434307D: ??? ==41137== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41137== by 0xA294418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41137== by 0xA22DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41137== by 0xAD31D38: PetscInitialize (pinit.c:924) ==41137== by 0xA153E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41137== by 0xA153EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41137== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41137== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41137== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41137== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41137== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41137== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41137== ==41137== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41137== at 0xA9AAA1C: __open_nocancel (open64_nocancel.c:39) ==41137== by 0xA92EBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41137== by 0xA191822: ??? ==41137== by 0xA19196F: ??? ==41137== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41137== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41137== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41137== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41137== by 0xA294418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41137== by 0xA22DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41137== by 0xAD31D38: PetscInitialize (pinit.c:924) ==41137== by 0xA153E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41137== by 0xA153EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41137== by 0x124904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41137== by 0x11F9B3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41137== by 0x12261C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41137== by 0x122517: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41137== by 0x122B2B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41137== by 0x11E1B5: main (TestExtendedBidomainProblem.cpp:18) ==41137== ==41137== Open file descriptor 145: ==41137== ==41137== ==41137== Open file descriptor 142: ==41137== ==41137== ==41137== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestExtendedBidomainProblem_valgrind.txt ==41137== ==41137== ==41137== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41137== ==41137== ==41137== ==41137== HEAP SUMMARY: ==41137== in use at exit: 618,834 bytes in 8,245 blocks ==41137== total heap usage: 2,372,933 allocs, 2,364,688 frees, 2,468,624,794 bytes allocated ==41137== ==41137== LEAK SUMMARY: ==41137== definitely lost: 0 bytes in 0 blocks ==41137== indirectly lost: 0 bytes in 0 blocks ==41137== possibly lost: 0 bytes in 0 blocks ==41137== still reachable: 24 bytes in 2 blocks ==41137== suppressed: 618,810 bytes in 8,243 blocks ==41137== Reachable blocks (those to which a pointer was found) are not shown. ==41137== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41137== ==41137== For lists of detected and suppressed errors, rerun with: -s ==41137== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 39 from 34)