==40999== Memcheck, a memory error detector ==40999== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40999== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40999== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info ==40999== Parent PID: 23956 ==40999== ==40999== ==40999== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40999== Open file descriptor 12: ==40999== at 0xC10507D: pipe (pipe.c:29) ==40999== by 0x1434207D: ??? ==40999== by 0xFB0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40999== by 0xB9F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40999== by 0xB98CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40999== by 0xA683D38: PetscInitialize (pinit.c:924) ==40999== by 0xA557E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40999== by 0xA557EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40999== by 0x140886: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40999== by 0x13A03D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40999== by 0x13D718: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40999== by 0x13D5B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40999== by 0x13DC4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40999== by 0x1382C5: main (TestBidomainProblem.cpp:19) ==40999== ==40999== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40999== at 0xC109A1C: __open_nocancel (open64_nocancel.c:39) ==40999== by 0xC08DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40999== by 0x8103822: ??? ==40999== by 0x810396F: ??? ==40999== by 0xFBAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40999== by 0xFBAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40999== by 0xFB65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40999== by 0xFB0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40999== by 0xB9F3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40999== by 0xB98CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40999== by 0xA683D38: PetscInitialize (pinit.c:924) ==40999== by 0xA557E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40999== by 0xA557EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40999== by 0x140886: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40999== by 0x13A03D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40999== by 0x13D718: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40999== by 0x13D5B8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40999== by 0x13DC4F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40999== by 0x1382C5: main (TestBidomainProblem.cpp:19) ==40999== ==40999== Open file descriptor 145: ==40999== ==40999== ==40999== Open file descriptor 142: ==40999== ==40999== ==40999== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt ==40999== ==40999== ==40999== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40999== ==40999== ==40999== ==40999== HEAP SUMMARY: ==40999== in use at exit: 618,911 bytes in 8,249 blocks ==40999== total heap usage: 584,921 allocs, 576,672 frees, 1,549,322,463 bytes allocated ==40999== ==40999== LEAK SUMMARY: ==40999== definitely lost: 0 bytes in 0 blocks ==40999== indirectly lost: 0 bytes in 0 blocks ==40999== possibly lost: 0 bytes in 0 blocks ==40999== still reachable: 24 bytes in 2 blocks ==40999== suppressed: 618,887 bytes in 8,247 blocks ==40999== Reachable blocks (those to which a pointer was found) are not shown. ==40999== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40999== ==40999== For lists of detected and suppressed errors, rerun with: -s ==40999== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38)