==40379== Memcheck, a memory error detector ==40379== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40379== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40379== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOffLatticeCryptProjectionSimulation -malloc_debug -malloc_dump -memory_info ==40379== Parent PID: 23956 ==40379== ==40379== ==40379== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40379== Open file descriptor 12: ==40379== at 0x126D307D: pipe (pipe.c:29) ==40379== by 0x1B3EA07D: ??? ==40379== by 0x1654E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40379== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40379== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40379== by 0x10B61D38: PetscInitialize (pinit.c:924) ==40379== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40379== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40379== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40379== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40379== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40379== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40379== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40379== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==40379== ==40379== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40379== at 0x126D7A1C: __open_nocancel (open64_nocancel.c:39) ==40379== by 0x1265BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40379== by 0x11DF1822: ??? ==40379== by 0x11DF196F: ??? ==40379== by 0x165F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40379== by 0x165F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40379== by 0x165A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40379== by 0x1654E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40379== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40379== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40379== by 0x10B61D38: PetscInitialize (pinit.c:924) ==40379== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40379== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40379== by 0x135AC5: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40379== by 0x12F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40379== by 0x131D16: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40379== by 0x131BB6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40379== by 0x13224D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40379== by 0x12D735: main (TestOffLatticeCryptProjectionSimulation.cpp:19) ==40379== ==40379== Open file descriptor 145: ==40379== ==40379== ==40379== Open file descriptor 142: ==40379== ==40379== ==40379== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeCryptProjectionSimulation_valgrind.txt ==40379== ==40379== ==40379== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40379== ==40379== ==40379== ==40379== HEAP SUMMARY: ==40379== in use at exit: 618,463 bytes in 8,240 blocks ==40379== total heap usage: 1,405,483 allocs, 1,397,243 frees, 1,455,794,601 bytes allocated ==40379== ==40379== LEAK SUMMARY: ==40379== definitely lost: 0 bytes in 0 blocks ==40379== indirectly lost: 0 bytes in 0 blocks ==40379== possibly lost: 0 bytes in 0 blocks ==40379== still reachable: 56 bytes in 3 blocks ==40379== suppressed: 618,407 bytes in 8,237 blocks ==40379== Reachable blocks (those to which a pointer was found) are not shown. ==40379== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40379== ==40379== For lists of detected and suppressed errors, rerun with: -s ==40379== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)