==26907== Memcheck, a memory error detector ==26907== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26907== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26907== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26907== Parent PID: 23956 ==26907== ==26907== ==26907== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26907== Open file descriptor 12: ==26907== at 0xFD3D07D: pipe (pipe.c:29) ==26907== by 0x1972A07D: ??? ==26907== by 0x14D2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26907== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26907== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26907== by 0x1028CD38: PetscInitialize (pinit.c:924) ==26907== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26907== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26907== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26907== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26907== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26907== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26907== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26907== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26907== ==26907== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26907== at 0xFD41A1C: __open_nocancel (open64_nocancel.c:39) ==26907== by 0xFCC5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26907== by 0xF550822: ??? ==26907== by 0xF55096F: ??? ==26907== by 0x14DD46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26907== by 0x14DD4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26907== by 0x14D8A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26907== by 0x14D2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26907== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26907== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26907== by 0x1028CD38: PetscInitialize (pinit.c:924) ==26907== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26907== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26907== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26907== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26907== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26907== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26907== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26907== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26907== ==26907== Open file descriptor 145: ==26907== ==26907== ==26907== Open file descriptor 142: ==26907== ==26907== ==26907== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26907== ==26907== ==26907== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26907== ==26907== ==26907== ==26907== HEAP SUMMARY: ==26907== in use at exit: 618,370 bytes in 8,236 blocks ==26907== total heap usage: 8,121,499 allocs, 8,113,263 frees, 2,696,143,013 bytes allocated ==26907== ==26907== LEAK SUMMARY: ==26907== definitely lost: 0 bytes in 0 blocks ==26907== indirectly lost: 0 bytes in 0 blocks ==26907== possibly lost: 0 bytes in 0 blocks ==26907== still reachable: 56 bytes in 3 blocks ==26907== suppressed: 618,314 bytes in 8,233 blocks ==26907== Reachable blocks (those to which a pointer was found) are not shown. ==26907== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26907== ==26907== For lists of detected and suppressed errors, rerun with: -s ==26907== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)