==39918== Memcheck, a memory error detector ==39918== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39918== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39918== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39918== Parent PID: 23956 ==39918== ==39918== ==39918== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39918== Open file descriptor 12: ==39918== at 0xF87507D: pipe (pipe.c:29) ==39918== by 0x1972907D: ??? ==39918== by 0x14D324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39918== by 0x114D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39918== by 0x1146AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39918== by 0x10161D38: PetscInitialize (pinit.c:924) ==39918== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39918== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39918== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39918== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39918== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39918== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39918== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39918== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39918== ==39918== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39918== at 0xF879A1C: __open_nocancel (open64_nocancel.c:39) ==39918== by 0xF7FDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39918== by 0xF1B3822: ??? ==39918== by 0xF1B396F: ??? ==39918== by 0x14DD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39918== by 0x14DD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39918== by 0x14D8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39918== by 0x14D322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39918== by 0x114D1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39918== by 0x1146AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39918== by 0x10161D38: PetscInitialize (pinit.c:924) ==39918== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39918== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39918== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39918== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39918== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39918== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39918== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39918== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==39918== ==39918== Open file descriptor 145: ==39918== ==39918== ==39918== Open file descriptor 142: ==39918== ==39918== ==39918== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==39918== ==39918== ==39918== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39918== ==39918== ==39918== ==39918== HEAP SUMMARY: ==39918== in use at exit: 618,370 bytes in 8,236 blocks ==39918== total heap usage: 5,223,393 allocs, 5,215,157 frees, 1,780,281,245 bytes allocated ==39918== ==39918== LEAK SUMMARY: ==39918== definitely lost: 0 bytes in 0 blocks ==39918== indirectly lost: 0 bytes in 0 blocks ==39918== possibly lost: 0 bytes in 0 blocks ==39918== still reachable: 56 bytes in 3 blocks ==39918== suppressed: 618,314 bytes in 8,233 blocks ==39918== Reachable blocks (those to which a pointer was found) are not shown. ==39918== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39918== ==39918== For lists of detected and suppressed errors, rerun with: -s ==39918== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)