==39985== Memcheck, a memory error detector ==39985== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39985== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39985== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39985== Parent PID: 23956 ==39985== ==39985== ==39985== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39985== Open file descriptor 12: ==39985== at 0x10D2C07D: pipe (pipe.c:29) ==39985== by 0x1972907D: ??? ==39985== by 0x14C944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39985== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39985== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39985== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==39985== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39985== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39985== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39985== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39985== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39985== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39985== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39985== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==39985== ==39985== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39985== at 0x10D30A1C: __open_nocancel (open64_nocancel.c:39) ==39985== by 0x10CB4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39985== by 0x10531822: ??? ==39985== by 0x1053196F: ??? ==39985== by 0x14D396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39985== by 0x14D39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39985== by 0x14CEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39985== by 0x14C942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39985== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39985== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39985== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==39985== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39985== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39985== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39985== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39985== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39985== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39985== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39985== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==39985== ==39985== Open file descriptor 145: ==39985== ==39985== ==39985== Open file descriptor 142: ==39985== ==39985== ==39985== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==39985== ==39985== ==39985== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39985== ==39985== ==39985== ==39985== HEAP SUMMARY: ==39985== in use at exit: 618,370 bytes in 8,236 blocks ==39985== total heap usage: 3,501,454 allocs, 3,493,218 frees, 2,270,508,387 bytes allocated ==39985== ==39985== LEAK SUMMARY: ==39985== definitely lost: 0 bytes in 0 blocks ==39985== indirectly lost: 0 bytes in 0 blocks ==39985== possibly lost: 0 bytes in 0 blocks ==39985== still reachable: 56 bytes in 3 blocks ==39985== suppressed: 618,314 bytes in 8,233 blocks ==39985== Reachable blocks (those to which a pointer was found) are not shown. ==39985== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39985== ==39985== For lists of detected and suppressed errors, rerun with: -s ==39985== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)