==25860== Memcheck, a memory error detector ==25860== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25860== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25860== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==25860== Parent PID: 24048 ==25860== ==25860== ==25860== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25860== Open file descriptor 12: ==25860== at 0xF00707D: pipe (pipe.c:29) ==25860== by 0x1972907D: ??? ==25860== by 0x13CCD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25860== by 0xEC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25860== by 0xEBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25860== by 0xD87FD38: PetscInitialize (pinit.c:924) ==25860== by 0xD753E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25860== by 0xD753EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25860== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25860== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25860== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25860== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25860== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25860== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25860== ==25860== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25860== at 0xF00BA1C: __open_nocancel (open64_nocancel.c:39) ==25860== by 0xEF8FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25860== by 0xEB0F822: ??? ==25860== by 0xEB0F96F: ??? ==25860== by 0x13D726DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25860== by 0x13D72938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25860== by 0x13D28922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25860== by 0x13CCD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25860== by 0xEC12418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25860== by 0xEBABD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25860== by 0xD87FD38: PetscInitialize (pinit.c:924) ==25860== by 0xD753E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25860== by 0xD753EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25860== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==25860== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25860== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25860== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25860== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25860== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==25860== ==25860== Open file descriptor 145: ==25860== ==25860== ==25860== Open file descriptor 142: ==25860== ==25860== ==25860== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==25860== ==25860== ==25860== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25860== ==25860== ==25860== ==25860== HEAP SUMMARY: ==25860== in use at exit: 618,415 bytes in 8,239 blocks ==25860== total heap usage: 166,083 allocs, 157,844 frees, 1,349,977,523 bytes allocated ==25860== ==25860== LEAK SUMMARY: ==25860== definitely lost: 0 bytes in 0 blocks ==25860== indirectly lost: 0 bytes in 0 blocks ==25860== possibly lost: 0 bytes in 0 blocks ==25860== still reachable: 24 bytes in 2 blocks ==25860== suppressed: 618,391 bytes in 8,237 blocks ==25860== Reachable blocks (those to which a pointer was found) are not shown. ==25860== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25860== ==25860== For lists of detected and suppressed errors, rerun with: -s ==25860== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)