==26113== Memcheck, a memory error detector ==26113== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26113== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26113== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==26113== Parent PID: 24048 ==26113== ==26113== ==26113== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26113== Open file descriptor 12: ==26113== at 0xF9A007D: pipe (pipe.c:29) ==26113== by 0x1972907D: ??? ==26113== by 0x14D324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26113== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26113== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26113== by 0x1028CD38: PetscInitialize (pinit.c:924) ==26113== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26113== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26113== by 0x2E2C5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26113== by 0x2D9459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26113== by 0x2DDE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26113== by 0x2DDCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26113== by 0x2DE35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26113== by 0x2D7875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26113== ==26113== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26113== at 0xF9A4A1C: __open_nocancel (open64_nocancel.c:39) ==26113== by 0xF928BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26113== by 0xF1B3822: ??? ==26113== by 0xF1B396F: ??? ==26113== by 0x14DD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26113== by 0x14DD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26113== by 0x14D8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26113== by 0x14D322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26113== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26113== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26113== by 0x1028CD38: PetscInitialize (pinit.c:924) ==26113== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26113== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26113== by 0x2E2C5E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26113== by 0x2D9459: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26113== by 0x2DDE24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26113== by 0x2DDCC4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26113== by 0x2DE35B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26113== by 0x2D7875: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==26113== ==26113== Open file descriptor 145: ==26113== ==26113== ==26113== Open file descriptor 142: ==26113== ==26113== ==26113== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==26113== ==26113== ==26113== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26113== ==26113== ==26113== ==26113== HEAP SUMMARY: ==26113== in use at exit: 618,447 bytes in 8,240 blocks ==26113== total heap usage: 111,888 allocs, 103,648 frees, 1,346,969,996 bytes allocated ==26113== ==26113== LEAK SUMMARY: ==26113== definitely lost: 0 bytes in 0 blocks ==26113== indirectly lost: 0 bytes in 0 blocks ==26113== possibly lost: 0 bytes in 0 blocks ==26113== still reachable: 56 bytes in 3 blocks ==26113== suppressed: 618,391 bytes in 8,237 blocks ==26113== Reachable blocks (those to which a pointer was found) are not shown. ==26113== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26113== ==26113== For lists of detected and suppressed errors, rerun with: -s ==26113== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)