==27156== Memcheck, a memory error detector ==27156== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27156== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27156== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27156== Parent PID: 24048 ==27156== ==27156== ==27156== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27156== Open file descriptor 12: ==27156== at 0x10E5507D: pipe (pipe.c:29) ==27156== by 0x1972907D: ??? ==27156== by 0x14C944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27156== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27156== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27156== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==27156== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27156== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27156== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27156== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27156== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27156== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27156== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27156== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27156== ==27156== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27156== at 0x10E59A1C: __open_nocancel (open64_nocancel.c:39) ==27156== by 0x10DDDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27156== by 0x10531822: ??? ==27156== by 0x1053196F: ??? ==27156== by 0x14D396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27156== by 0x14D39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27156== by 0x14CEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27156== by 0x14C942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27156== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27156== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27156== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==27156== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27156== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27156== by 0x1FFF4F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27156== by 0x1F9AF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27156== by 0x1FD464: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27156== by 0x1FD304: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27156== by 0x1FD99B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27156== by 0x1F7F15: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27156== ==27156== Open file descriptor 145: ==27156== ==27156== ==27156== Open file descriptor 142: ==27156== ==27156== ==27156== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27156== ==27156== ==27156== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27156== ==27156== ==27156== ==27156== HEAP SUMMARY: ==27156== in use at exit: 618,370 bytes in 8,236 blocks ==27156== total heap usage: 9,703,022 allocs, 9,694,786 frees, 2,583,863,511 bytes allocated ==27156== ==27156== LEAK SUMMARY: ==27156== definitely lost: 0 bytes in 0 blocks ==27156== indirectly lost: 0 bytes in 0 blocks ==27156== possibly lost: 0 bytes in 0 blocks ==27156== still reachable: 56 bytes in 3 blocks ==27156== suppressed: 618,314 bytes in 8,233 blocks ==27156== Reachable blocks (those to which a pointer was found) are not shown. ==27156== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27156== ==27156== For lists of detected and suppressed errors, rerun with: -s ==27156== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)