==35355== Memcheck, a memory error detector ==35355== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==35355== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==35355== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==35355== Parent PID: 24048 ==35355== ==35355== ==35355== FILE DESCRIPTORS: 9 open (3 std) at exit. ==35355== Open file descriptor 12: ==35355== at 0xF9A007D: pipe (pipe.c:29) ==35355== by 0x1972907D: ??? ==35355== by 0x14D324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35355== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35355== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35355== by 0x1028CD38: PetscInitialize (pinit.c:924) ==35355== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35355== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35355== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35355== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35355== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35355== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35355== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35355== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35355== ==35355== Open file descriptor 8: /dev/shm/open_mpi.0000 ==35355== at 0xF9A4A1C: __open_nocancel (open64_nocancel.c:39) ==35355== by 0xF928BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==35355== by 0xF1B3822: ??? ==35355== by 0xF1B396F: ??? ==35355== by 0x14DD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35355== by 0x14DD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35355== by 0x14D8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==35355== by 0x14D322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==35355== by 0x115FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35355== by 0x11595D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==35355== by 0x1028CD38: PetscInitialize (pinit.c:924) ==35355== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==35355== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==35355== by 0x1D7694: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==35355== by 0x1CF179: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==35355== by 0x1D29F8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==35355== by 0x1D2898: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==35355== by 0x1D2F2F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==35355== by 0x1CD595: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19) ==35355== ==35355== Open file descriptor 145: ==35355== ==35355== ==35355== Open file descriptor 142: ==35355== ==35355== ==35355== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPottsBasedCellPopulation_valgrind.txt ==35355== ==35355== ==35355== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==35355== ==35355== ==35355== ==35355== HEAP SUMMARY: ==35355== in use at exit: 618,386 bytes in 8,237 blocks ==35355== total heap usage: 11,682,533 allocs, 11,674,296 frees, 2,208,525,854 bytes allocated ==35355== ==35355== LEAK SUMMARY: ==35355== definitely lost: 0 bytes in 0 blocks ==35355== indirectly lost: 0 bytes in 0 blocks ==35355== possibly lost: 0 bytes in 0 blocks ==35355== still reachable: 72 bytes in 4 blocks ==35355== suppressed: 618,314 bytes in 8,233 blocks ==35355== Reachable blocks (those to which a pointer was found) are not shown. ==35355== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==35355== ==35355== For lists of detected and suppressed errors, rerun with: -s ==35355== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)