==40277== Memcheck, a memory error detector ==40277== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40277== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40277== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40277== Parent PID: 24048 ==40277== ==40277== ==40277== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40277== Open file descriptor 12: ==40277== at 0x1113507D: pipe (pipe.c:29) ==40277== by 0x1B3EC07D: ??? ==40277== by 0x165EE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40277== by 0x12EBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x12E55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x11B4CD38: PetscInitialize (pinit.c:924) ==40277== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40277== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40277== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40277== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40277== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40277== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40277== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40277== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40277== ==40277== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40277== at 0x11139A1C: __open_nocancel (open64_nocancel.c:39) ==40277== by 0x110BDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40277== by 0x10A73822: ??? ==40277== by 0x10A7396F: ??? ==40277== by 0x166936DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x16693938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x16649922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40277== by 0x165EE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40277== by 0x12EBC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x12E55D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40277== by 0x11B4CD38: PetscInitialize (pinit.c:924) ==40277== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40277== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40277== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40277== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40277== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40277== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40277== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40277== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40277== ==40277== Open file descriptor 145: ==40277== ==40277== ==40277== Open file descriptor 142: ==40277== ==40277== ==40277== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40277== ==40277== ==40277== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40277== ==40277== ==40277== ==40277== HEAP SUMMARY: ==40277== in use at exit: 618,463 bytes in 8,240 blocks ==40277== total heap usage: 56,485 allocs, 48,245 frees, 1,339,517,436 bytes allocated ==40277== ==40277== LEAK SUMMARY: ==40277== definitely lost: 0 bytes in 0 blocks ==40277== indirectly lost: 0 bytes in 0 blocks ==40277== possibly lost: 0 bytes in 0 blocks ==40277== still reachable: 56 bytes in 3 blocks ==40277== suppressed: 618,407 bytes in 8,237 blocks ==40277== Reachable blocks (those to which a pointer was found) are not shown. ==40277== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40277== ==40277== For lists of detected and suppressed errors, rerun with: -s ==40277== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)