==41568== Memcheck, a memory error detector ==41568== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41568== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41568== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem -malloc_debug -malloc_dump -memory_info ==41568== Parent PID: 24074 ==41568== ==41568== ==41568== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41568== Open file descriptor 12: ==41568== at 0x858007D: pipe (pipe.c:29) ==41568== by 0x1434207D: ??? ==41568== by 0xEE3B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41568== by 0x9C7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41568== by 0x9C14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41568== by 0x890BD38: PetscInitialize (pinit.c:924) ==41568== by 0x81A9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41568== by 0x81A9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41568== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41568== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41568== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41568== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41568== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41568== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==41568== ==41568== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41568== at 0x8584A1C: __open_nocancel (open64_nocancel.c:39) ==41568== by 0x8508BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41568== by 0x81E7822: ??? ==41568== by 0x81E796F: ??? ==41568== by 0xEEE26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41568== by 0xEEE2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41568== by 0xEE98922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41568== by 0xEE3B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41568== by 0x9C7B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41568== by 0x9C14D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41568== by 0x890BD38: PetscInitialize (pinit.c:924) ==41568== by 0x81A9E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41568== by 0x81A9EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41568== by 0x1151B2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41568== by 0x110CB3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41568== by 0x112FCA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41568== by 0x112EC5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41568== by 0x1134D9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41568== by 0x10F4B5: main (TestHodgkinHuxleySquidAxon1952OriginalOdeSystem.cpp:18) ==41568== ==41568== Open file descriptor 145: ==41568== ==41568== ==41568== Open file descriptor 142: ==41568== ==41568== ==41568== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHodgkinHuxleySquidAxon1952OriginalOdeSystem_valgrind.txt ==41568== ==41568== ==41568== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41568== ==41568== ==41568== ==41568== HEAP SUMMARY: ==41568== in use at exit: 618,431 bytes in 8,239 blocks ==41568== total heap usage: 49,004 allocs, 40,765 frees, 1,338,872,655 bytes allocated ==41568== ==41568== LEAK SUMMARY: ==41568== definitely lost: 0 bytes in 0 blocks ==41568== indirectly lost: 0 bytes in 0 blocks ==41568== possibly lost: 0 bytes in 0 blocks ==41568== still reachable: 24 bytes in 2 blocks ==41568== suppressed: 618,407 bytes in 8,237 blocks ==41568== Reachable blocks (those to which a pointer was found) are not shown. ==41568== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41568== ==41568== For lists of detected and suppressed errors, rerun with: -s ==41568== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)