==26086== Memcheck, a memory error detector ==26086== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26086== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26086== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithBuskeUpdate -malloc_debug -malloc_dump -memory_info ==26086== Parent PID: 24074 ==26086== ==26086== ==26086== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26086== Open file descriptor 12: ==26086== at 0xF8B707D: pipe (pipe.c:29) ==26086== by 0x1972907D: ??? ==26086== by 0x14D324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26086== by 0x11515418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26086== by 0x114AED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26086== by 0x101A3D38: PetscInitialize (pinit.c:924) ==26086== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26086== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26086== by 0x2CC5F8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26086== by 0x2C3ADF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26086== by 0x2C7EF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26086== by 0x2C7DF3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26086== by 0x2C8407: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26086== by 0x2C22D5: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26086== ==26086== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26086== at 0xF8BBA1C: __open_nocancel (open64_nocancel.c:39) ==26086== by 0xF83FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26086== by 0xF1B3822: ??? ==26086== by 0xF1B396F: ??? ==26086== by 0x14DD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26086== by 0x14DD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26086== by 0x14D8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26086== by 0x14D322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26086== by 0x11515418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26086== by 0x114AED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26086== by 0x101A3D38: PetscInitialize (pinit.c:924) ==26086== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26086== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26086== by 0x2CC5F8: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26086== by 0x2C3ADF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26086== by 0x2C7EF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26086== by 0x2C7DF3: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26086== by 0x2C8407: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26086== by 0x2C22D5: main (TestNodeBasedCellPopulationWithBuskeUpdate.cpp:18) ==26086== ==26086== Open file descriptor 145: ==26086== ==26086== ==26086== Open file descriptor 142: ==26086== ==26086== ==26086== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithBuskeUpdate_valgrind.txt ==26086== ==26086== ==26086== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26086== ==26086== ==26086== ==26086== HEAP SUMMARY: ==26086== in use at exit: 618,447 bytes in 8,240 blocks ==26086== total heap usage: 57,251 allocs, 49,011 frees, 1,340,569,630 bytes allocated ==26086== ==26086== LEAK SUMMARY: ==26086== definitely lost: 0 bytes in 0 blocks ==26086== indirectly lost: 0 bytes in 0 blocks ==26086== possibly lost: 0 bytes in 0 blocks ==26086== still reachable: 56 bytes in 3 blocks ==26086== suppressed: 618,391 bytes in 8,237 blocks ==26086== Reachable blocks (those to which a pointer was found) are not shown. ==26086== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26086== ==26086== For lists of detected and suppressed errors, rerun with: -s ==26086== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)