==26639== Memcheck, a memory error detector ==26639== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26639== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26639== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26639== Parent PID: 24671 ==26639== ==26639== ==26639== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26639== Open file descriptor 12: ==26639== at 0xF94807D: pipe (pipe.c:29) ==26639== by 0x1972907D: ??? ==26639== by 0x14D324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26639== by 0x11515418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26639== by 0x114AED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26639== by 0x101A3D38: PetscInitialize (pinit.c:924) ==26639== by 0xF204E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26639== by 0xF204EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26639== by 0x2E35E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26639== by 0x2DA0D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26639== by 0x2DE936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26639== by 0x2DE7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26639== by 0x2DEE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26639== by 0x2D84F5: main (TestNodeBasedCellPopulation.cpp:19) ==26639== ==26639== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26639== at 0xF94CA1C: __open_nocancel (open64_nocancel.c:39) ==26639== by 0xF8D0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26639== by 0xF23C822: ??? ==26639== by 0xF23C96F: ??? ==26639== by 0x14DD76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26639== by 0x14DD7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26639== by 0x14D8D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26639== by 0x14D322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26639== by 0x11515418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26639== by 0x114AED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26639== by 0x101A3D38: PetscInitialize (pinit.c:924) ==26639== by 0xF204E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26639== by 0xF204EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26639== by 0x2E35E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26639== by 0x2DA0D9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26639== by 0x2DE936: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26639== by 0x2DE7D6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26639== by 0x2DEE6D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26639== by 0x2D84F5: main (TestNodeBasedCellPopulation.cpp:19) ==26639== ==26639== Open file descriptor 145: ==26639== ==26639== ==26639== Open file descriptor 142: ==26639== ==26639== ==26639== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==26639== ==26639== ==26639== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26639== ==26639== ==26639== ==26639== HEAP SUMMARY: ==26639== in use at exit: 618,370 bytes in 8,236 blocks ==26639== total heap usage: 30,290,675 allocs, 30,282,439 frees, 3,165,103,265 bytes allocated ==26639== ==26639== LEAK SUMMARY: ==26639== definitely lost: 0 bytes in 0 blocks ==26639== indirectly lost: 0 bytes in 0 blocks ==26639== possibly lost: 0 bytes in 0 blocks ==26639== still reachable: 56 bytes in 3 blocks ==26639== suppressed: 618,314 bytes in 8,233 blocks ==26639== Reachable blocks (those to which a pointer was found) are not shown. ==26639== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26639== ==26639== For lists of detected and suppressed errors, rerun with: -s ==26639== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)