==40789== Memcheck, a memory error detector ==40789== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40789== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40789== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40789== Parent PID: 24671 ==40789== ==40789== ==40789== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40789== Open file descriptor 12: ==40789== at 0x10C0C07D: pipe (pipe.c:29) ==40789== by 0x1B3EA07D: ??? ==40789== by 0x1558D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40789== by 0x10514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x104ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0xF1A4D38: PetscInitialize (pinit.c:924) ==40789== by 0xF078E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40789== by 0xF078EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40789== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40789== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40789== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40789== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40789== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40789== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40789== ==40789== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40789== at 0x10C10A1C: __open_nocancel (open64_nocancel.c:39) ==40789== by 0x10B94BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40789== by 0x611C822: ??? ==40789== by 0x611C96F: ??? ==40789== by 0x156326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x15632938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x155E8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40789== by 0x1558D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40789== by 0x10514418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0x104ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40789== by 0xF1A4D38: PetscInitialize (pinit.c:924) ==40789== by 0xF078E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40789== by 0xF078EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40789== by 0x192669: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40789== by 0x18A60B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40789== by 0x18DC08: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40789== by 0x18DAA8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40789== by 0x18E13F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40789== by 0x186F35: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19) ==40789== ==40789== Open file descriptor 145: ==40789== ==40789== ==40789== Open file descriptor 142: ==40789== ==40789== ==40789== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOdeBasedCellCycleModelsForCrypt_valgrind.txt ==40789== ==40789== ==40789== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40789== ==40789== ==40789== ==40789== HEAP SUMMARY: ==40789== in use at exit: 618,527 bytes in 8,241 blocks ==40789== total heap usage: 861,989 allocs, 853,748 frees, 1,461,247,290 bytes allocated ==40789== ==40789== LEAK SUMMARY: ==40789== definitely lost: 0 bytes in 0 blocks ==40789== indirectly lost: 0 bytes in 0 blocks ==40789== possibly lost: 0 bytes in 0 blocks ==40789== still reachable: 120 bytes in 4 blocks ==40789== suppressed: 618,407 bytes in 8,237 blocks ==40789== Reachable blocks (those to which a pointer was found) are not shown. ==40789== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40789== ==40789== For lists of detected and suppressed errors, rerun with: -s ==40789== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)