==28651== Memcheck, a memory error detector ==28651== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==28651== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==28651== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==28651== Parent PID: 24671 ==28651== ==28651== ==28651== FILE DESCRIPTORS: 9 open (3 std) at exit. ==28651== Open file descriptor 12: ==28651== at 0xFCFB07D: pipe (pipe.c:29) ==28651== by 0x1972A07D: ??? ==28651== by 0x14D2F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28651== by 0x115BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28651== by 0x11553D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28651== by 0x10248D38: PetscInitialize (pinit.c:924) ==28651== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28651== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28651== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28651== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28651== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28651== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28651== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28651== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28651== ==28651== Open file descriptor 8: /dev/shm/open_mpi.0000 ==28651== at 0xFCFFA1C: __open_nocancel (open64_nocancel.c:39) ==28651== by 0xFC83BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==28651== by 0xF54A822: ??? ==28651== by 0xF54A96F: ??? ==28651== by 0x14DD46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28651== by 0x14DD4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28651== by 0x14D8A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==28651== by 0x14D2F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==28651== by 0x115BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28651== by 0x11553D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==28651== by 0x10248D38: PetscInitialize (pinit.c:924) ==28651== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==28651== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==28651== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==28651== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==28651== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==28651== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==28651== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==28651== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==28651== ==28651== Open file descriptor 145: ==28651== ==28651== ==28651== Open file descriptor 142: ==28651== ==28651== ==28651== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==28651== ==28651== ==28651== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==28651== ==28651== ==28651== ==28651== HEAP SUMMARY: ==28651== in use at exit: 618,370 bytes in 8,236 blocks ==28651== total heap usage: 2,403,734 allocs, 2,395,498 frees, 1,794,890,980 bytes allocated ==28651== ==28651== LEAK SUMMARY: ==28651== definitely lost: 0 bytes in 0 blocks ==28651== indirectly lost: 0 bytes in 0 blocks ==28651== possibly lost: 0 bytes in 0 blocks ==28651== still reachable: 56 bytes in 3 blocks ==28651== suppressed: 618,314 bytes in 8,233 blocks ==28651== Reachable blocks (those to which a pointer was found) are not shown. ==28651== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==28651== ==28651== For lists of detected and suppressed errors, rerun with: -s ==28651== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)