==41403== Memcheck, a memory error detector ==41403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==41403== Parent PID: 24671 ==41403== ==41403== ==41403== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41403== Open file descriptor 12: ==41403== at 0x125EC07D: pipe (pipe.c:29) ==41403== by 0x1B3EA07D: ??? ==41403== by 0x1654E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41403== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41403== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41403== by 0x10B61D38: PetscInitialize (pinit.c:924) ==41403== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41403== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41403== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41403== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41403== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41403== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41403== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41403== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41403== ==41403== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41403== at 0x125F0A1C: __open_nocancel (open64_nocancel.c:39) ==41403== by 0x12574BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41403== by 0x11DEB822: ??? ==41403== by 0x11DEB96F: ??? ==41403== by 0x165F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41403== by 0x165F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41403== by 0x165A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41403== by 0x1654E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41403== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41403== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41403== by 0x10B61D38: PetscInitialize (pinit.c:924) ==41403== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41403== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41403== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41403== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41403== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41403== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41403== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41403== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==41403== ==41403== Open file descriptor 145: ==41403== ==41403== ==41403== Open file descriptor 142: ==41403== ==41403== ==41403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==41403== ==41403== ==41403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41403== ==41403== ==41403== ==41403== HEAP SUMMARY: ==41403== in use at exit: 618,386 bytes in 8,236 blocks ==41403== total heap usage: 16,194,201 allocs, 16,185,965 frees, 2,837,217,683 bytes allocated ==41403== ==41403== LEAK SUMMARY: ==41403== definitely lost: 0 bytes in 0 blocks ==41403== indirectly lost: 0 bytes in 0 blocks ==41403== possibly lost: 0 bytes in 0 blocks ==41403== still reachable: 56 bytes in 3 blocks ==41403== suppressed: 618,330 bytes in 8,233 blocks ==41403== Reachable blocks (those to which a pointer was found) are not shown. ==41403== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41403== ==41403== For lists of detected and suppressed errors, rerun with: -s ==41403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)