==40545== Memcheck, a memory error detector ==40545== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40545== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40545== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningImmersedBoundarySimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40545== Parent PID: 24671 ==40545== ==40545== ==40545== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40545== Open file descriptor 12: ==40545== at 0x10D2C07D: pipe (pipe.c:29) ==40545== by 0x1972907D: ??? ==40545== by 0x14C944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40545== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40545== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40545== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==40545== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40545== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40545== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40545== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40545== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40545== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40545== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40545== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40545== ==40545== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40545== at 0x10D30A1C: __open_nocancel (open64_nocancel.c:39) ==40545== by 0x10CB4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40545== by 0x1052B822: ??? ==40545== by 0x1052B96F: ??? ==40545== by 0x14D396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40545== by 0x14D39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40545== by 0x14CEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40545== by 0x14C942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40545== by 0x10634418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40545== by 0x105CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40545== by 0xF2A1D38: PetscInitialize (pinit.c:924) ==40545== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40545== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40545== by 0x120CF3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40545== by 0x11C533: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40545== by 0x11E8AC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40545== by 0x11E7A7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40545== by 0x11EDBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40545== by 0x11AD35: main (TestRunningImmersedBoundarySimulationsTutorial.cpp:18) ==40545== ==40545== Open file descriptor 145: ==40545== ==40545== ==40545== Open file descriptor 142: ==40545== ==40545== ==40545== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningImmersedBoundarySimulationsTutorial_valgrind.txt ==40545== ==40545== ==40545== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40545== ==40545== ==40545== ==40545== HEAP SUMMARY: ==40545== in use at exit: 618,370 bytes in 8,236 blocks ==40545== total heap usage: 654,950 allocs, 646,714 frees, 1,513,197,683 bytes allocated ==40545== ==40545== LEAK SUMMARY: ==40545== definitely lost: 0 bytes in 0 blocks ==40545== indirectly lost: 0 bytes in 0 blocks ==40545== possibly lost: 0 bytes in 0 blocks ==40545== still reachable: 56 bytes in 3 blocks ==40545== suppressed: 618,314 bytes in 8,233 blocks ==40545== Reachable blocks (those to which a pointer was found) are not shown. ==40545== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40545== ==40545== For lists of detected and suppressed errors, rerun with: -s ==40545== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)