==41442== Memcheck, a memory error detector ==41442== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41442== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41442== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41442== Parent PID: 24671 ==41442== ==41442== ==41442== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41442== Open file descriptor 12: ==41442== at 0x125EC07D: pipe (pipe.c:29) ==41442== by 0x1B3EA07D: ??? ==41442== by 0x1654E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41442== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41442== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41442== by 0x10B61D38: PetscInitialize (pinit.c:924) ==41442== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41442== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41442== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41442== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41442== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41442== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41442== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41442== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41442== ==41442== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41442== at 0x125F0A1C: __open_nocancel (open64_nocancel.c:39) ==41442== by 0x12574BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41442== by 0x11DEB822: ??? ==41442== by 0x11DEB96F: ??? ==41442== by 0x165F36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41442== by 0x165F3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41442== by 0x165A9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41442== by 0x1654E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41442== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41442== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41442== by 0x10B61D38: PetscInitialize (pinit.c:924) ==41442== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41442== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41442== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41442== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41442== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41442== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41442== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41442== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41442== ==41442== Open file descriptor 145: ==41442== ==41442== ==41442== Open file descriptor 142: ==41442== ==41442== ==41442== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==41442== ==41442== ==41442== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41442== ==41442== ==41442== ==41442== HEAP SUMMARY: ==41442== in use at exit: 618,543 bytes in 8,241 blocks ==41442== total heap usage: 1,617,655 allocs, 1,609,414 frees, 1,458,705,763 bytes allocated ==41442== ==41442== LEAK SUMMARY: ==41442== definitely lost: 0 bytes in 0 blocks ==41442== indirectly lost: 0 bytes in 0 blocks ==41442== possibly lost: 0 bytes in 0 blocks ==41442== still reachable: 136 bytes in 4 blocks ==41442== suppressed: 618,407 bytes in 8,237 blocks ==41442== Reachable blocks (those to which a pointer was found) are not shown. ==41442== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41442== ==41442== For lists of detected and suppressed errors, rerun with: -s ==41442== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)