==26943== Memcheck, a memory error detector ==26943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26943== Parent PID: 24129 ==26943== ==26943== ==26943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26943== Open file descriptor 12: ==26943== at 0xFD3D07D: pipe (pipe.c:29) ==26943== by 0x1972907D: ??? ==26943== by 0x12B6F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26943== by 0x10298418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26943== by 0x10231D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26943== by 0x103DDD38: PetscInitialize (pinit.c:924) ==26943== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26943== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26943== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26943== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26943== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26943== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26943== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26943== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26943== ==26943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26943== at 0xFD41A1C: __open_nocancel (open64_nocancel.c:39) ==26943== by 0xFCC5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26943== by 0xF54A822: ??? ==26943== by 0xF54A96F: ??? ==26943== by 0x12C146DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26943== by 0x12C14938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26943== by 0x12BCA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26943== by 0x12B6F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26943== by 0x10298418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26943== by 0x10231D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26943== by 0x103DDD38: PetscInitialize (pinit.c:924) ==26943== by 0xF512E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26943== by 0xF512EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26943== by 0x22246E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26943== by 0x21BB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26943== by 0x21F66A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26943== by 0x21F50A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26943== by 0x21FBA1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26943== by 0x219F15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26943== ==26943== Open file descriptor 145: ==26943== ==26943== ==26943== Open file descriptor 142: ==26943== ==26943== ==26943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26943== ==26943== ==26943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26943== ==26943== ==26943== ==26943== HEAP SUMMARY: ==26943== in use at exit: 618,370 bytes in 8,236 blocks ==26943== total heap usage: 8,121,500 allocs, 8,113,264 frees, 2,696,143,574 bytes allocated ==26943== ==26943== LEAK SUMMARY: ==26943== definitely lost: 0 bytes in 0 blocks ==26943== indirectly lost: 0 bytes in 0 blocks ==26943== possibly lost: 0 bytes in 0 blocks ==26943== still reachable: 56 bytes in 3 blocks ==26943== suppressed: 618,314 bytes in 8,233 blocks ==26943== Reachable blocks (those to which a pointer was found) are not shown. ==26943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26943== ==26943== For lists of detected and suppressed errors, rerun with: -s ==26943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)