==39938== Memcheck, a memory error detector ==39938== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39938== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39938== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningContactInhibitionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==39938== Parent PID: 24129 ==39938== ==39938== ==39938== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39938== Open file descriptor 12: ==39938== at 0x10E1307D: pipe (pipe.c:29) ==39938== by 0x1972907D: ??? ==39938== by 0x14CE14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39938== by 0x10979418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39938== by 0x10912D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39938== by 0xF609D38: PetscInitialize (pinit.c:924) ==39938== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39938== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39938== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39938== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39938== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39938== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39938== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39938== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39938== ==39938== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39938== at 0x10E17A1C: __open_nocancel (open64_nocancel.c:39) ==39938== by 0x10D9BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39938== by 0xF1AD822: ??? ==39938== by 0xF1AD96F: ??? ==39938== by 0x14D866DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39938== by 0x14D86938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39938== by 0x14D3C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39938== by 0x14CE12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39938== by 0x10979418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39938== by 0x10912D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39938== by 0xF609D38: PetscInitialize (pinit.c:924) ==39938== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39938== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39938== by 0x128209: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39938== by 0x123673: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39938== by 0x1259CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39938== by 0x1258CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39938== by 0x125EDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39938== by 0x121E75: main (TestRunningContactInhibitionSimulationsTutorial.cpp:18) ==39938== ==39938== Open file descriptor 145: ==39938== ==39938== ==39938== Open file descriptor 142: ==39938== ==39938== ==39938== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningContactInhibitionSimulationsTutorial_valgrind.txt ==39938== ==39938== ==39938== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39938== ==39938== ==39938== ==39938== HEAP SUMMARY: ==39938== in use at exit: 618,370 bytes in 8,236 blocks ==39938== total heap usage: 11,436,899 allocs, 11,428,663 frees, 4,779,348,812 bytes allocated ==39938== ==39938== LEAK SUMMARY: ==39938== definitely lost: 0 bytes in 0 blocks ==39938== indirectly lost: 0 bytes in 0 blocks ==39938== possibly lost: 0 bytes in 0 blocks ==39938== still reachable: 56 bytes in 3 blocks ==39938== suppressed: 618,314 bytes in 8,233 blocks ==39938== Reachable blocks (those to which a pointer was found) are not shown. ==39938== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39938== ==39938== For lists of detected and suppressed errors, rerun with: -s ==39938== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)