==40402== Memcheck, a memory error detector ==40402== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40402== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40402== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info ==40402== Parent PID: 24157 ==40402== ==40402== ==40402== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40402== Open file descriptor 12: ==40402== at 0x109CA07D: pipe (pipe.c:29) ==40402== by 0x1B3EA07D: ??? ==40402== by 0x1553C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40402== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40402== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40402== by 0x6277D38: PetscInitialize (pinit.c:924) ==40402== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40402== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40402== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40402== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40402== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40402== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40402== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40402== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40402== ==40402== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40402== at 0x109CEA1C: __open_nocancel (open64_nocancel.c:39) ==40402== by 0x10952BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40402== by 0x611C822: ??? ==40402== by 0x611C96F: ??? ==40402== by 0x155E16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40402== by 0x155E1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40402== by 0x15597922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40402== by 0x1553C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40402== by 0x102D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40402== by 0x1026BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40402== by 0x6277D38: PetscInitialize (pinit.c:924) ==40402== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40402== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40402== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40402== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40402== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40402== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40402== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40402== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40402== ==40402== Open file descriptor 145: ==40402== ==40402== ==40402== Open file descriptor 142: ==40402== ==40402== ==40402== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt ==40402== ==40402== ==40402== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40402== ==40402== ==40402== ==40402== HEAP SUMMARY: ==40402== in use at exit: 618,607 bytes in 8,242 blocks ==40402== total heap usage: 263,065 allocs, 254,823 frees, 1,357,631,851 bytes allocated ==40402== ==40402== LEAK SUMMARY: ==40402== definitely lost: 0 bytes in 0 blocks ==40402== indirectly lost: 0 bytes in 0 blocks ==40402== possibly lost: 0 bytes in 0 blocks ==40402== still reachable: 200 bytes in 5 blocks ==40402== suppressed: 618,407 bytes in 8,237 blocks ==40402== Reachable blocks (those to which a pointer was found) are not shown. ==40402== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40402== ==40402== For lists of detected and suppressed errors, rerun with: -s ==40402== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)