==41078== Memcheck, a memory error detector ==41078== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41078== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41078== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41078== Parent PID: 24244 ==41078== ==41078== ==41078== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41078== Open file descriptor 12: ==41078== at 0x125EC0ED: pipe (pipe.c:29) ==41078== by 0x1B3EE07D: ??? ==41078== by 0x165DF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41078== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41078== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41078== by 0x6210D38: PetscInitialize (pinit.c:924) ==41078== by 0x11DB3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41078== by 0x11DB3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41078== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41078== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41078== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41078== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41078== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41078== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41078== ==41078== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41078== at 0x125F0A8C: __open_nocancel (open64_nocancel.c:39) ==41078== by 0x12574BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41078== by 0x11DF1822: ??? ==41078== by 0x11DF196F: ??? ==41078== by 0x166846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41078== by 0x16684938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41078== by 0x1663A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41078== by 0x165DF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41078== by 0x11EF4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41078== by 0x11E8DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41078== by 0x6210D38: PetscInitialize (pinit.c:924) ==41078== by 0x11DB3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41078== by 0x11DB3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41078== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41078== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41078== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41078== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41078== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41078== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==41078== ==41078== Open file descriptor 145: ==41078== ==41078== ==41078== Open file descriptor 142: ==41078== ==41078== ==41078== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==41078== ==41078== ==41078== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41078== ==41078== ==41078== ==41078== HEAP SUMMARY: ==41078== in use at exit: 618,519 bytes in 8,241 blocks ==41078== total heap usage: 1,617,657 allocs, 1,609,416 frees, 1,458,705,593 bytes allocated ==41078== ==41078== LEAK SUMMARY: ==41078== definitely lost: 0 bytes in 0 blocks ==41078== indirectly lost: 0 bytes in 0 blocks ==41078== possibly lost: 0 bytes in 0 blocks ==41078== still reachable: 136 bytes in 4 blocks ==41078== suppressed: 618,383 bytes in 8,237 blocks ==41078== Reachable blocks (those to which a pointer was found) are not shown. ==41078== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41078== ==41078== For lists of detected and suppressed errors, rerun with: -s ==41078== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)