==40287== Memcheck, a memory error detector ==40287== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40287== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40287== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40287== Parent PID: 24007 ==40287== ==40287== ==40287== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40287== Open file descriptor 12: ==40287== at 0x111350ED: pipe (pipe.c:29) ==40287== by 0x1B3F007D: ??? ==40287== by 0x144324CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40287== by 0x11B58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40287== by 0x11AF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40287== by 0x11C9DD38: PetscInitialize (pinit.c:924) ==40287== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40287== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40287== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40287== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40287== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40287== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40287== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40287== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40287== ==40287== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40287== at 0x11139A8C: __open_nocancel (open64_nocancel.c:39) ==40287== by 0x110BDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40287== by 0x10A73822: ??? ==40287== by 0x10A7396F: ??? ==40287== by 0x144D76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40287== by 0x144D7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40287== by 0x1448D922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40287== by 0x144322DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40287== by 0x11B58418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40287== by 0x11AF1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40287== by 0x11C9DD38: PetscInitialize (pinit.c:924) ==40287== by 0x10A35E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40287== by 0x10A35EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40287== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40287== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40287== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40287== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40287== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40287== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40287== ==40287== Open file descriptor 145: ==40287== ==40287== ==40287== Open file descriptor 142: ==40287== ==40287== ==40287== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40287== ==40287== ==40287== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40287== ==40287== ==40287== ==40287== HEAP SUMMARY: ==40287== in use at exit: 618,439 bytes in 8,240 blocks ==40287== total heap usage: 56,488 allocs, 48,248 frees, 1,339,518,199 bytes allocated ==40287== ==40287== LEAK SUMMARY: ==40287== definitely lost: 0 bytes in 0 blocks ==40287== indirectly lost: 0 bytes in 0 blocks ==40287== possibly lost: 0 bytes in 0 blocks ==40287== still reachable: 56 bytes in 3 blocks ==40287== suppressed: 618,383 bytes in 8,237 blocks ==40287== Reachable blocks (those to which a pointer was found) are not shown. ==40287== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40287== ==40287== For lists of detected and suppressed errors, rerun with: -s ==40287== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)