==26213== Memcheck, a memory error detector ==26213== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26213== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26213== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info ==26213== Parent PID: 24062 ==26213== ==26213== ==26213== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26213== Open file descriptor 12: ==26213== at 0xF8750ED: pipe (pipe.c:29) ==26213== by 0x1972D07D: ??? ==26213== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26213== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26213== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26213== by 0x102F6D38: PetscInitialize (pinit.c:924) ==26213== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26213== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26213== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26213== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26213== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26213== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26213== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26213== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26213== ==26213== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26213== at 0xF879A8C: __open_nocancel (open64_nocancel.c:39) ==26213== by 0xF7FDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26213== by 0xF1B3822: ??? ==26213== by 0xF1B396F: ??? ==26213== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26213== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26213== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26213== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26213== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26213== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26213== by 0x102F6D38: PetscInitialize (pinit.c:924) ==26213== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26213== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26213== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26213== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26213== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26213== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26213== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26213== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19) ==26213== ==26213== Open file descriptor 145: ==26213== ==26213== ==26213== Open file descriptor 142: ==26213== ==26213== ==26213== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt ==26213== ==26213== ==26213== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26213== ==26213== ==26213== ==26213== HEAP SUMMARY: ==26213== in use at exit: 638,058 bytes in 8,478 blocks ==26213== total heap usage: 1,125,039 allocs, 1,116,561 frees, 1,417,428,972 bytes allocated ==26213== ==26213== LEAK SUMMARY: ==26213== definitely lost: 0 bytes in 0 blocks ==26213== indirectly lost: 0 bytes in 0 blocks ==26213== possibly lost: 0 bytes in 0 blocks ==26213== still reachable: 56 bytes in 3 blocks ==26213== suppressed: 638,002 bytes in 8,475 blocks ==26213== Reachable blocks (those to which a pointer was found) are not shown. ==26213== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26213== ==26213== For lists of detected and suppressed errors, rerun with: -s ==26213== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)