==27358== Memcheck, a memory error detector ==27358== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27358== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27358== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27358== Parent PID: 24013 ==27358== ==27358== ==27358== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27358== Open file descriptor 12: ==27358== at 0xFE1C0ED: pipe (pipe.c:29) ==27358== by 0x1972D07D: ??? ==27358== by 0x12C874CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27358== by 0x10714418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27358== by 0x106ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27358== by 0x10859D38: PetscInitialize (pinit.c:924) ==27358== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27358== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27358== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27358== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27358== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27358== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27358== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27358== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27358== ==27358== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27358== at 0xFE20A8C: __open_nocancel (open64_nocancel.c:39) ==27358== by 0xFDA4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27358== by 0xF1B3822: ??? ==27358== by 0xF1B396F: ??? ==27358== by 0x12D2C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27358== by 0x12D2C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27358== by 0x12CE2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27358== by 0x12C872DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27358== by 0x10714418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27358== by 0x106ADD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27358== by 0x10859D38: PetscInitialize (pinit.c:924) ==27358== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27358== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27358== by 0x1D44C6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27358== by 0x1CDDF9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27358== by 0x1D1594: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27358== by 0x1D1434: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27358== by 0x1D1ACB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27358== by 0x1CC215: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27358== ==27358== Open file descriptor 145: ==27358== ==27358== ==27358== Open file descriptor 142: ==27358== ==27358== ==27358== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27358== ==27358== ==27358== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27358== ==27358== ==27358== ==27358== HEAP SUMMARY: ==27358== in use at exit: 618,350 bytes in 8,236 blocks ==27358== total heap usage: 7,141,319 allocs, 7,133,083 frees, 8,072,842,294 bytes allocated ==27358== ==27358== LEAK SUMMARY: ==27358== definitely lost: 0 bytes in 0 blocks ==27358== indirectly lost: 0 bytes in 0 blocks ==27358== possibly lost: 0 bytes in 0 blocks ==27358== still reachable: 56 bytes in 3 blocks ==27358== suppressed: 618,294 bytes in 8,233 blocks ==27358== Reachable blocks (those to which a pointer was found) are not shown. ==27358== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27358== ==27358== For lists of detected and suppressed errors, rerun with: -s ==27358== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)