==40031== Memcheck, a memory error detector ==40031== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40031== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40031== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40031== Parent PID: 24013 ==40031== ==40031== ==40031== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40031== Open file descriptor 12: ==40031== at 0xF8750ED: pipe (pipe.c:29) ==40031== by 0x1972D07D: ??? ==40031== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40031== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40031== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40031== by 0x102F6D38: PetscInitialize (pinit.c:924) ==40031== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40031== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40031== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40031== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40031== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40031== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40031== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40031== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40031== ==40031== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40031== at 0xF879A8C: __open_nocancel (open64_nocancel.c:39) ==40031== by 0xF7FDBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40031== by 0xF1B3822: ??? ==40031== by 0xF1B396F: ??? ==40031== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40031== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40031== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40031== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40031== by 0x1016D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40031== by 0x10106D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40031== by 0x102F6D38: PetscInitialize (pinit.c:924) ==40031== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40031== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40031== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40031== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40031== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40031== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40031== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40031== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40031== ==40031== Open file descriptor 145: ==40031== ==40031== ==40031== Open file descriptor 142: ==40031== ==40031== ==40031== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40031== ==40031== ==40031== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40031== ==40031== ==40031== ==40031== HEAP SUMMARY: ==40031== in use at exit: 618,350 bytes in 8,236 blocks ==40031== total heap usage: 5,223,394 allocs, 5,215,158 frees, 1,780,281,349 bytes allocated ==40031== ==40031== LEAK SUMMARY: ==40031== definitely lost: 0 bytes in 0 blocks ==40031== indirectly lost: 0 bytes in 0 blocks ==40031== possibly lost: 0 bytes in 0 blocks ==40031== still reachable: 56 bytes in 3 blocks ==40031== suppressed: 618,294 bytes in 8,233 blocks ==40031== Reachable blocks (those to which a pointer was found) are not shown. ==40031== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40031== ==40031== For lists of detected and suppressed errors, rerun with: -s ==40031== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)