==40868== Memcheck, a memory error detector ==40868== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40868== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40868== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40868== Parent PID: 24058 ==40868== ==40868== ==40868== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40868== Open file descriptor 12: ==40868== at 0x1267B0ED: pipe (pipe.c:29) ==40868== by 0x1B3EE07D: ??? ==40868== by 0x1663E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40868== by 0x11F83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40868== by 0x11F1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40868== by 0x6210D38: PetscInitialize (pinit.c:924) ==40868== by 0x11DB3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40868== by 0x11DB3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40868== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40868== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40868== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40868== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40868== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40868== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40868== ==40868== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40868== at 0x1267FA8C: __open_nocancel (open64_nocancel.c:39) ==40868== by 0x12603BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40868== by 0x11DF1822: ??? ==40868== by 0x11DF196F: ??? ==40868== by 0x166E56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40868== by 0x166E5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40868== by 0x1669B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40868== by 0x1663E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40868== by 0x11F83418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40868== by 0x11F1CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40868== by 0x6210D38: PetscInitialize (pinit.c:924) ==40868== by 0x11DB3E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40868== by 0x11DB3EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40868== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40868== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40868== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40868== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40868== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40868== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40868== ==40868== Open file descriptor 145: ==40868== ==40868== ==40868== Open file descriptor 142: ==40868== ==40868== ==40868== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40868== ==40868== ==40868== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40868== ==40868== ==40868== ==40868== HEAP SUMMARY: ==40868== in use at exit: 618,519 bytes in 8,241 blocks ==40868== total heap usage: 1,617,656 allocs, 1,609,415 frees, 1,458,705,006 bytes allocated ==40868== ==40868== LEAK SUMMARY: ==40868== definitely lost: 0 bytes in 0 blocks ==40868== indirectly lost: 0 bytes in 0 blocks ==40868== possibly lost: 0 bytes in 0 blocks ==40868== still reachable: 136 bytes in 4 blocks ==40868== suppressed: 618,383 bytes in 8,237 blocks ==40868== Reachable blocks (those to which a pointer was found) are not shown. ==40868== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40868== ==40868== For lists of detected and suppressed errors, rerun with: -s ==40868== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)