==40234== Memcheck, a memory error detector ==40234== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40234== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40234== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40234== Parent PID: 24058 ==40234== ==40234== ==40234== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40234== Open file descriptor 12: ==40234== at 0x10A590ED: pipe (pipe.c:29) ==40234== by 0x1B3EE07D: ??? ==40234== by 0x1562C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40234== by 0x10361418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40234== by 0x102FAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40234== by 0x6277D38: PetscInitialize (pinit.c:924) ==40234== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40234== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40234== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40234== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40234== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40234== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40234== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40234== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40234== ==40234== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40234== at 0x10A5DA8C: __open_nocancel (open64_nocancel.c:39) ==40234== by 0x109E1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40234== by 0x6122822: ??? ==40234== by 0x612296F: ??? ==40234== by 0x156D16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40234== by 0x156D1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40234== by 0x15687922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40234== by 0x1562C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40234== by 0x10361418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40234== by 0x102FAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40234== by 0x6277D38: PetscInitialize (pinit.c:924) ==40234== by 0x101B4E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40234== by 0x101B4EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40234== by 0x18F219: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40234== by 0x18756B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40234== by 0x18A860: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40234== by 0x18A700: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40234== by 0x18AD97: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40234== by 0x183E95: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40234== ==40234== Open file descriptor 145: ==40234== ==40234== ==40234== Open file descriptor 142: ==40234== ==40234== ==40234== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40234== ==40234== ==40234== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40234== ==40234== ==40234== ==40234== HEAP SUMMARY: ==40234== in use at exit: 618,503 bytes in 8,241 blocks ==40234== total heap usage: 754,717 allocs, 746,476 frees, 1,373,117,936 bytes allocated ==40234== ==40234== LEAK SUMMARY: ==40234== definitely lost: 0 bytes in 0 blocks ==40234== indirectly lost: 0 bytes in 0 blocks ==40234== possibly lost: 0 bytes in 0 blocks ==40234== still reachable: 120 bytes in 4 blocks ==40234== suppressed: 618,383 bytes in 8,237 blocks ==40234== Reachable blocks (those to which a pointer was found) are not shown. ==40234== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40234== ==40234== For lists of detected and suppressed errors, rerun with: -s ==40234== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)