==39581== Memcheck, a memory error detector ==39581== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39581== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39581== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestStepSizeException -malloc_debug -malloc_dump -memory_info ==39581== Parent PID: 24089 ==39581== ==39581== ==39581== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39581== Open file descriptor 12: ==39581== at 0x4CC50ED: pipe (pipe.c:29) ==39581== by 0xAEBB07D: ??? ==39581== by 0x644D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39581== by 0x4EC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39581== by 0x4E59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39581== by 0x5047D38: PetscInitialize (pinit.c:924) ==39581== by 0x4908E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39581== by 0x4908EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39581== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39581== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39581== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39581== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39581== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39581== by 0x10D735: main (TestStepSizeException.cpp:19) ==39581== ==39581== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39581== at 0x4CC9A8C: __open_nocancel (open64_nocancel.c:39) ==39581== by 0x4C4DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39581== by 0x4946822: ??? ==39581== by 0x494696F: ??? ==39581== by 0x64F26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39581== by 0x64F2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39581== by 0x64A8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39581== by 0x644D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39581== by 0x4EC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39581== by 0x4E59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39581== by 0x5047D38: PetscInitialize (pinit.c:924) ==39581== by 0x4908E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39581== by 0x4908EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39581== by 0x113D54: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==39581== by 0x10F30D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39581== by 0x111C9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39581== by 0x111B3E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39581== by 0x1121D5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39581== by 0x10D735: main (TestStepSizeException.cpp:19) ==39581== ==39581== Open file descriptor 145: ==39581== ==39581== ==39581== Open file descriptor 142: ==39581== ==39581== ==39581== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStepSizeException_valgrind.txt ==39581== ==39581== ==39581== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39581== ==39581== ==39581== ==39581== HEAP SUMMARY: ==39581== in use at exit: 617,911 bytes in 8,239 blocks ==39581== total heap usage: 44,917 allocs, 36,678 frees, 1,338,497,324 bytes allocated ==39581== ==39581== LEAK SUMMARY: ==39581== definitely lost: 0 bytes in 0 blocks ==39581== indirectly lost: 0 bytes in 0 blocks ==39581== possibly lost: 0 bytes in 0 blocks ==39581== still reachable: 24 bytes in 2 blocks ==39581== suppressed: 617,887 bytes in 8,237 blocks ==39581== Reachable blocks (those to which a pointer was found) are not shown. ==39581== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39581== ==39581== For lists of detected and suppressed errors, rerun with: -s ==39581== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)