==40054== Memcheck, a memory error detector ==40054== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40054== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40054== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40054== Parent PID: 23980 ==40054== ==40054== ==40054== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40054== Open file descriptor 12: ==40054== at 0xF95C0ED: pipe (pipe.c:29) ==40054== by 0x1972D07D: ??? ==40054== by 0x12B784CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40054== by 0x10256418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40054== by 0x101EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40054== by 0x103DDD38: PetscInitialize (pinit.c:924) ==40054== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40054== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40054== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40054== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40054== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40054== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40054== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40054== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40054== ==40054== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40054== at 0xF960A8C: __open_nocancel (open64_nocancel.c:39) ==40054== by 0xF8E4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40054== by 0xF1B3822: ??? ==40054== by 0xF1B396F: ??? ==40054== by 0x12C1D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40054== by 0x12C1D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40054== by 0x12BD3922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40054== by 0x12B782DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40054== by 0x10256418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40054== by 0x101EFD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40054== by 0x103DDD38: PetscInitialize (pinit.c:924) ==40054== by 0xF175E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40054== by 0xF175EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40054== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40054== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40054== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40054== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40054== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40054== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40054== ==40054== Open file descriptor 145: ==40054== ==40054== ==40054== Open file descriptor 142: ==40054== ==40054== ==40054== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40054== ==40054== ==40054== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40054== ==40054== ==40054== ==40054== HEAP SUMMARY: ==40054== in use at exit: 618,423 bytes in 8,240 blocks ==40054== total heap usage: 725,426 allocs, 717,186 frees, 1,726,750,681 bytes allocated ==40054== ==40054== LEAK SUMMARY: ==40054== definitely lost: 0 bytes in 0 blocks ==40054== indirectly lost: 0 bytes in 0 blocks ==40054== possibly lost: 0 bytes in 0 blocks ==40054== still reachable: 56 bytes in 3 blocks ==40054== suppressed: 618,367 bytes in 8,237 blocks ==40054== Reachable blocks (those to which a pointer was found) are not shown. ==40054== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40054== ==40054== For lists of detected and suppressed errors, rerun with: -s ==40054== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)