==40939== Memcheck, a memory error detector ==40939== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40939== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40939== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info ==40939== Parent PID: 23999 ==40939== ==40939== ==40939== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40939== Open file descriptor 12: ==40939== at 0x6BE20ED: pipe (pipe.c:29) ==40939== by 0x107C307D: ??? ==40939== by 0xBAE34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40939== by 0x5EE7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40939== by 0x5E80D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40939== by 0x4A6ED38: PetscInitialize (pinit.c:924) ==40939== by 0x5DA6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40939== by 0x5DA6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40939== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40939== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40939== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40939== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40939== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40939== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40939== ==40939== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40939== at 0x6BE6A8C: __open_nocancel (open64_nocancel.c:39) ==40939== by 0x6B6ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40939== by 0x5DE4822: ??? ==40939== by 0x5DE496F: ??? ==40939== by 0xBB886DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40939== by 0xBB88938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40939== by 0xBB3E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40939== by 0xBAE32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40939== by 0x5EE7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40939== by 0x5E80D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40939== by 0x4A6ED38: PetscInitialize (pinit.c:924) ==40939== by 0x5DA6E75: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40939== by 0x5DA6EC3: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40939== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40939== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40939== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40939== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40939== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40939== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40939== ==40939== Open file descriptor 145: ==40939== ==40939== ==40939== Open file descriptor 142: ==40939== ==40939== ==40939== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt ==40939== ==40939== ==40939== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40939== ==40939== ==40939== ==40939== HEAP SUMMARY: ==40939== in use at exit: 638,026 bytes in 8,477 blocks ==40939== total heap usage: 627,782 allocs, 619,305 frees, 1,788,564,208 bytes allocated ==40939== ==40939== LEAK SUMMARY: ==40939== definitely lost: 0 bytes in 0 blocks ==40939== indirectly lost: 0 bytes in 0 blocks ==40939== possibly lost: 0 bytes in 0 blocks ==40939== still reachable: 24 bytes in 2 blocks ==40939== suppressed: 638,002 bytes in 8,475 blocks ==40939== Reachable blocks (those to which a pointer was found) are not shown. ==40939== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40939== ==40939== For lists of detected and suppressed errors, rerun with: -s ==40939== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)